Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0155.Seq
         (948 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0903 - 7607588-7607953                                           34   0.19 
01_01_0124 - 1145105-1145320,1145480-1145611,1146485-1146562,114...    33   0.33 
06_02_0262 + 13563082-13563633                                         31   1.8  
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193...    29   7.1  
06_01_1168 - 9949128-9950621                                           28   9.4  
03_05_0719 + 27103044-27103141,27103215-27103386                       28   9.4  

>07_01_0903 - 7607588-7607953
          Length = 121

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 312 RRQTFNTAIAGDYGADEQTGESTNRWRAGSRSDAGSTA 425
           RRQ        D    +Q G    RWRAG+  +AGSTA
Sbjct: 36  RRQMGGGGADADNNVPDQAGAGGGRWRAGAGGEAGSTA 73


>01_01_0124 - 1145105-1145320,1145480-1145611,1146485-1146562,
            1147022-1147199,1147269-1147441,1147531-1147632,
            1147717-1147794,1148178-1148259,1148343-1148405,
            1150196-1150275,1150529-1150723,1150812-1151073,
            1151566-1151720,1151799-1151865,1151956-1152179,
            1152322-1152451,1153228-1153284,1153396-1153527,
            1153758-1154086
          Length = 910

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
 Frame = +3

Query: 267  RDVHKTIAKVTDDIGRRQTFNTAIAGDYGADEQTGESTNRWRAGSRSDAGS-TAGRCPYA 443
            R +HK IA+VT++I +   FNTAI+    A  +   +  +W    +S   S      P+A
Sbjct: 761  RVLHKCIARVTEEI-QETRFNTAIS----AMMEFVNAAYKWDTQPKSVIESFILLLSPFA 815

Query: 444  *PVHPAHLLHAVAGTERRRRYRNAPWPVADEKAMVEDSTLVVVQVNGKVRAKITV 608
               H A  L    G  R   +    +P    + + E   ++ VQ+NGK R  I V
Sbjct: 816  --PHMAEELWFRLGNSRSLAHEQ--FPEGKSEYLKESKLVLPVQINGKTRGTILV 866



 Score = 31.9 bits (69), Expect = 0.77
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 614 DATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGK 718
           + +E+   + A  +  ++KYL G  +RK IYVPG+
Sbjct: 869 ECSEDDAFQIAASDEKLSKYLTGKGIRKRIYVPGR 903


>06_02_0262 + 13563082-13563633
          Length = 183

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 22/77 (28%), Positives = 29/77 (37%)
 Frame = +3

Query: 312 RRQTFNTAIAGDYGADEQTGESTNRWRAGSRSDAGSTAGRCPYA*PVHPAHLLHAVAGTE 491
           RR  +   + G  G    +G+  +    G R       GR     P  P H L      E
Sbjct: 66  RRWRWRCNVGGGRGG-AGSGDGVHASAVGVRGAWQWGGGRREAGAPCAPGHELPRRGDAE 124

Query: 492 RRRRYRNAPWPVADEKA 542
           RRRR R   WP++   A
Sbjct: 125 RRRRRRGGVWPLSASAA 141


>01_06_0873 + 32617428-32617532,32618166-32618234,32619195-32619380,
            32619687-32619776,32620389-32620462,32621149-32621260,
            32621413-32621468,32621826-32621880,32621965-32622021,
            32622696-32622797,32623467-32623547,32623756-32623808,
            32625245-32625314,32626540-32626603,32627339-32627487,
            32627564-32627719,32628011-32628108,32628763-32628847,
            32628932-32628997,32629066-32629125,32629408-32629494,
            32630307-32630360,32630538-32630576,32630651-32630779,
            32630859-32630911,32630984-32631032,32632240-32632298,
            32633111-32633259,32633338-32633492,32633719-32633847,
            32633932-32634017,32634220-32634335,32634429-32634541,
            32635335-32635458,32635540-32635658,32636289-32636490,
            32636586-32636757,32637852-32638176,32638442-32638529,
            32638970-32639059,32639169-32639370,32639681-32639705
          Length = 1450

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 334  QLRAIMELMNKLAKAPTDGEQDRA---LMQEALLAVVRMLNPFTPHICFTLWQEL 489
            +L A+M LM K +  PTD + +      +Q  +L ++ ML P T  +  ++W  L
Sbjct: 1061 RLMAVMHLMIKSSMNPTDYDNELGSIPALQRGILEIIPMLRPTT--MLSSMWSPL 1113


>06_01_1168 - 9949128-9950621
          Length = 497

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 522 PVADEKAMVEDSTLVVVQVNGKVRAKITVPWTQRKNRFANVLARNI 659
           P AD+ A V ++T++     G  R   + PW +R+ R   V AR +
Sbjct: 427 PTADDVAGVLEATVLAADGGGWARGWRSSPWRRRRRR-GKVAARGL 471


>03_05_0719 + 27103044-27103141,27103215-27103386
          Length = 89

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 489 ERRRRYRNAPWPVADEKAMVEDSTLVVVQVNGKVRAKITVPWTQRKNRF 635
           +RRR   +APW VAD  A  ++ +     + G+    +  PW    +R+
Sbjct: 11  KRRRLSSSAPWRVADVDAWNKNKS-YAGWITGERHGSVAAPWQLLAHRY 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,864,912
Number of Sequences: 37544
Number of extensions: 644802
Number of successful extensions: 1822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1822
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)