Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0155.Seq
(948 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18) 33 0.26
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 31 1.8
SB_40708| Best HMM Match : SRCR (HMM E-Value=0) 30 2.4
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 2.4
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17) 30 2.4
SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_3746| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_20505| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.3
SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3) 29 7.3
SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11) 29 7.3
SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7) 29 7.3
SB_55749| Best HMM Match : SRCR (HMM E-Value=0) 28 9.6
SB_20224| Best HMM Match : ABC_tran (HMM E-Value=2.2e-36) 28 9.6
SB_25467| Best HMM Match : Voltage_CLC (HMM E-Value=2.4e-10) 28 9.6
>SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)
Length = 878
Score = 33.5 bits (73), Expect = 0.26
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 469 FTLWQELKGEGDIATRRGRLLTKKRWWKTPRW 564
+T+ EL D+ +R G ++ WWK P W
Sbjct: 507 WTIRDELNNPADLGSRGGSIVNADMWWKGPEW 538
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 30.7 bits (66), Expect = 1.8
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -3
Query: 286 IVLCTSRRSAFDFQSAHHMDK--QRYAG*SIVRAISTNPRSILRMPCQVLI*MGNSVPSA 113
++LCT+ +S Q + + Q +G + TNP+S+ +P VL +VPS
Sbjct: 1677 VLLCTNVQSVSGLQQKYVLPTSVQNVSGSQQKILLQTNPQSVSGLPKVVLPTSVQNVPSL 1736
Query: 112 TRKIFADSSMPN 77
+K+ +S N
Sbjct: 1737 QQKVLLQTSTQN 1748
>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1976
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +1
Query: 580 TVKSVPKSPFRGRNGRTGSRTCWPGTS 660
T K V K P G G T SRTCWP +S
Sbjct: 1393 TNKCVDKCPL-GNYGNTKSRTCWPCSS 1418
>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1741
Score = 30.3 bits (65), Expect = 2.4
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +1
Query: 535 KKRWWKTP--RWSWCRLTVKSVPKSPFRGRNGRTGSRTCWPGTSGSKIS 675
K W++ RW WC LT S R G TC GT G ++S
Sbjct: 36 KTMWYRLQISRWKWCFLTALITADSKLRTSFGTIAWATC--GTIGKRLS 82
>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
Length = 1086
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = -1
Query: 141 YKWGIAYRAPPERFLRIHQCQTTKSP-----AGSAPDAARCATSELR 16
+K +A R+P + RIH+ QTT SP + PD+AR + E+R
Sbjct: 218 HKTSLAKRSPERQSARIHRKQTT-SPSHIPRSHQTPDSARAGSEEIR 263
>SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 70 FCGLALMNPQKSFWWRSVRYS-PFIS-TPGMASVISIAGWW 186
F +ALM FW+ S R+S P S + ++S+ S A WW
Sbjct: 381 FLKMALMRSLSGFWFSSSRFSRPSSSISDSLSSLRSRASWW 421
>SB_3746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.1 bits (62), Expect = 5.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -1
Query: 558 WSLPPSLFRQQPATARCDIAFAFQFLPQREADVRGERVKHTDNGQQCFLHQSAILLAIG 382
+S P R Q CD+A LPQ +A + GER GQ+ ++ + + A G
Sbjct: 157 FSKPYDEERYQRTLEACDLAKDIVSLPQGDATILGERGASLSGGQKARVNLARAVYADG 215
>SB_20505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 28.7 bits (61), Expect = 7.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 502 DIATRRGRLLTKKRWWKTPRW 564
D+ +R G ++ + WWK P W
Sbjct: 70 DLGSRGGSVVNAEMWWKGPEW 90
>SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3)
Length = 866
Score = 28.7 bits (61), Expect = 7.3
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Frame = +3
Query: 333 AIAGDYGADEQTGESTNRWRAGSRSDAGSTAGRCPYA*PVHP--AHLLHAVAGTERRRRY 506
A+A A+ S R R + S A A YA P A +L A+A + R R
Sbjct: 606 AVAQPQEAESLKPRSRGRARKRNTSAAEMLASLSNYAPPTSTPMASMLSALASSARDRLC 665
Query: 507 RNAPWPVADEKAMVEDSTLVVVQVNGKVRAKITVPWTQ 620
VAD+ + +L VVQ G I VP Q
Sbjct: 666 LGNQ--VADDANTSGEKSLTVVQSEGNAPVLIQVPHNQ 701
>SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)
Length = 1461
Score = 28.7 bits (61), Expect = 7.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 502 DIATRRGRLLTKKRWWKTPRW 564
DI +R G ++ WWK P W
Sbjct: 958 DIGSRGGSVVNADMWWKGPEW 978
>SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)
Length = 1223
Score = 28.7 bits (61), Expect = 7.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 70 FCGLALMNPQKSFWWRSVRYSPFIS--TPGMASVISIAGWWR 189
F +ALM FW+ S R+S F S + ++S+ S A W R
Sbjct: 427 FLKMALMRSLSGFWFSSSRFSLFSSSISDSLSSLRSRASWRR 468
>SB_55749| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1224
Score = 28.3 bits (60), Expect = 9.6
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Frame = +3
Query: 306 IGRRQTFNTAIAGDYGADEQTGESTNRWRAGSRSDAGSTAGRCPYA*PVHPA------HL 467
+G + ++G YG + T W +G+ S S A C Y H A L
Sbjct: 718 LGYPEAEKEVLSGRYGEGRGPIQMTRVWCSGTESSLMSCASDCCYCSHSHVAVFCKTVRL 777
Query: 468 LHAVAGTERR-RRYRNAPW 521
+ V E R YRNA W
Sbjct: 778 IGGVLPFEGRVEIYRNASW 796
>SB_20224| Best HMM Match : ABC_tran (HMM E-Value=2.2e-36)
Length = 380
Score = 28.3 bits (60), Expect = 9.6
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -1
Query: 543 SLFRQQPATARCDIAFAFQFLPQREADVRGERVKHTDNGQQC 418
SLF +Q A C + F+FLP+R+ V G R T +G QC
Sbjct: 237 SLFYKQVVDA-CALEHDFRFLPERDLTVIGAR-GMTLSGGQC 276
>SB_25467| Best HMM Match : Voltage_CLC (HMM E-Value=2.4e-10)
Length = 300
Score = 28.3 bits (60), Expect = 9.6
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 54 LIPLVILWFGIDESAKIFLVALGTLFPIYI-NTWHGIRNIDRG 179
L PLV++ F + + + A+G LF I + +T+ +RN RG
Sbjct: 82 LFPLVLITFSVGFTHLVSPHAIGVLFSIEVTSTYFAVRNYWRG 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,333,676
Number of Sequences: 59808
Number of extensions: 697666
Number of successful extensions: 2073
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2072
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2776707833
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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