Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0155.Seq
         (948 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3731|AAF56409.1|  165|Drosophila melanogaster CG13652-P...    34   0.33 
AE014134-2673|AAN10929.1| 2519|Drosophila melanogaster CG4894-PB...    31   3.1  
AE014296-2483|AAN11792.1|  175|Drosophila melanogaster CG6988-PB...    30   5.3  

>AE014297-3731|AAF56409.1|  165|Drosophila melanogaster CG13652-PA
           protein.
          Length = 165

 Score = 33.9 bits (74), Expect = 0.33
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 653 PGQHVREPVLPLRPR--NGDFGTDFTVNLHHDQRGVFHHRFFVSNRPRRVAISPSPFSSC 480
           P   V E   PL  +   G F  ++  + HHD++ V   R  + NR   V  S  P +SC
Sbjct: 44  PVSVVLEAQCPLHKQLEGGQF-YNYNYHFHHDEQAVVIRRQLLGNRAEDVTSSFQPSNSC 102

Query: 479 HS 474
           HS
Sbjct: 103 HS 104


>AE014134-2673|AAN10929.1| 2519|Drosophila melanogaster CG4894-PB,
            isoform B protein.
          Length = 2519

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 697  FTYSNAIKIFCYQMFLASTFANLFFRCV-HGTVILARTLPL 578
            F+Y+N  ++FC+ +   S F N+   C+   + +LA   PL
Sbjct: 1330 FSYTNRFRVFCHWLCNHSNFGNIILCCIMFSSAMLAAENPL 1370


>AE014296-2483|AAN11792.1|  175|Drosophila melanogaster CG6988-PB,
           isoform B protein.
          Length = 175

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 508 ATRRGRLLTKKRWWKTPRWSWCRLTVKSVPKSPFRGRNGRTGSRTCWPGTS 660
           +TR  R+L+  RW   P  SW  L  +  P+S    R     S + W G S
Sbjct: 72  STRTMRILSLPRWTPLPT-SWRALRSRPSPQSNTSARRTTRSSTSTWTGLS 121


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,841,864
Number of Sequences: 53049
Number of extensions: 1021125
Number of successful extensions: 2991
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2991
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4710216690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)