Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0155.Seq
         (948 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    34   0.17 
U50301-9|AAB37047.1|  305|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA s...    29   3.7  

>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
           protein R11A8.6 protein.
          Length = 1141

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
 Frame = +1

Query: 235 DALTENQKRCVAMCIKRSLK*PMISAVVRPSTPQLRAIMELMNKLAKAPTDG-----EQD 399
           D   E+    +   +++ +    + AVV P T     +  +  +L +    G     EQ 
Sbjct: 692 DRWIESFTNSLVAFVRKEMDSYRLYAVVGPLTKFFDTLTNIYIRLNRKRVKGDNGLHEQH 751

Query: 400 RAL--MQEALLAVVRMLNPFTPHICFTLWQELK 492
            AL  +   L+ +VR++ PFTP  C  +W  LK
Sbjct: 752 HALAALGRVLILIVRLMAPFTPFFCEYIWLNLK 784


>U50301-9|AAB37047.1|  305|Caenorhabditis elegans Hypothetical
           protein F20D6.2 protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 519 WPVADEKAMVEDSTLVVVQVNGKVRAKITVPWTQRKNRFANVLARN 656
           +P  +EK  +ED+ ++V Q+N ++ +    P  + +  FAN L +N
Sbjct: 204 FPFIEEKGQLEDNGIIVCQINIEIHS----PIDEDRETFANFLRKN 245


>Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical
           protein ZK524.3b protein.
          Length = 828

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 412 QEALLAVVRMLNPFTPHICFTLWQELKGEGDIAT 513
           Q A+ +++ ML  F PH+   +W  L  +G + +
Sbjct: 668 QRAVKSLIIMLQVFCPHVASEMWSALANDGSLVS 701


>Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical
           protein ZK524.3a protein.
          Length = 859

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 412 QEALLAVVRMLNPFTPHICFTLWQELKGEGDIAT 513
           Q A+ +++ ML  F PH+   +W  L  +G + +
Sbjct: 699 QRAVKSLIIMLQVFCPHVASEMWSALANDGSLVS 732


>AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 828

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 412 QEALLAVVRMLNPFTPHICFTLWQELKGEGDIAT 513
           Q A+ +++ ML  F PH+   +W  L  +G + +
Sbjct: 668 QRAVKSLIIMLQVFCPHVASEMWSALANDGSLVS 701


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,294,346
Number of Sequences: 27780
Number of extensions: 490965
Number of successful extensions: 1311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)