Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0155.Seq
         (948 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   5.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   9.3  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   9.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 73  CGLALMNPQKSFWWRSVRYSPFISTPGMAS 162
           CG+A  +P  +  W     SPF   P +AS
Sbjct: 632 CGVAAGDPPLTISWLKDGQSPFPLPPNLAS 661


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 546 VEDSTLVVVQVNGKVRAKITVPWTQRKNRFANVLAR 653
           +++ TL+  ++ G +     V W     RFA +L R
Sbjct: 352 IQEVTLLREKIYGALEGYCRVAWPDDAGRFAKLLLR 387


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 546 VEDSTLVVVQVNGKVRAKITVPWTQRKNRFANVLAR 653
           +++ TL+  ++ G +     V W     RFA +L R
Sbjct: 352 IQEVTLLREKIYGALEGYCRVAWPDDAGRFAKLLLR 387


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 529 LTKKRWWKTPR 561
           + +KRWW  PR
Sbjct: 40  IKRKRWWSRPR 50


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
 Frame = -2

Query: 680 HQDILLPDVPGQHVREPVLPLRPRNGDFGTDFTVNLHHDQRGV--FHHRFFVSNRPRRVA 507
           H + L   +PG +V   V  +  +    G     + +   RG   F  +  V N P +++
Sbjct: 295 HHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQIS 354

Query: 506 ISPSPFSSCHSVKQMC 459
              +P   CH+    C
Sbjct: 355 NGYTPVLDCHTAHIAC 370


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
 Frame = -2

Query: 680 HQDILLPDVPGQHVREPVLPLRPRNGDFGTDFTVNLHHDQRGV--FHHRFFVSNRPRRVA 507
           H + L   +PG +V   V  +  +    G     + +   RG   F  +  V N P +++
Sbjct: 6   HHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQIS 65

Query: 506 ISPSPFSSCHSVKQMC 459
              +P   CH+    C
Sbjct: 66  NGYTPVLDCHTAHIAC 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,589
Number of Sequences: 438
Number of extensions: 5990
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)