Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0148.Seq
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    27   2.4  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    27   3.1  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   5.5  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   5.5  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    26   7.2  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    26   7.2  

>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 549 LFKRVLPIPWTIITSTVLIFSTVRREPLDSVKHWILTFL 433
           L  R+L +P  ++ +T+L F+     P D ++H +L+ L
Sbjct: 6   LLYRILTLPIILVGTTILYFTIGTNFPHDELRHNLLSTL 44


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 686 NGCPTXQTETHYCFTAEIGGAVVPTRADSQEVLPPVIAFH*HKYVVCSNVFYL 528
           +GCP      +   +A     + P  A  +EV+  V A H H  + C+ VF L
Sbjct: 384 HGCPYRTYSVNNLVSALASMGIAPDSAGCREVVEAVKARHYH--IACTRVFEL 434


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 754 IDHLQRXAXHTLTYKF*GLSIVT 686
           +DH+QR   H L Y F G  I+T
Sbjct: 750 MDHIQRQLSHDLWYLFLGYFIIT 772


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -3

Query: 321 LSEHFLVNLMRNYDNYLFKILLSSIYKFLIHIYLTNFKFFNII*EKKTFFQSGIFPHNRK 142
           + + F V+   NYDNY+F  L+      ++          ++  E+ T F S I+ +++ 
Sbjct: 406 IKDFFSVSFRANYDNYIFLSLICETRAIIVSPEGVFSANHDLSCEESTIFVSTIYGNSQI 465

Query: 141 FLIHYK-VRL 115
             I  K +RL
Sbjct: 466 LQITTKEIRL 475


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 519 TIITSTVLIFSTVRREPLDSVKHWILTFLKRLP*ALNGK 403
           T++     + S + ++ +D    WI  F  +LP  LNG+
Sbjct: 152 TVLEILESLSSWLEKDAIDLQSQWIFCFCYKLPELLNGE 190


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 519 TIITSTVLIFSTVRREPLDSVKHWILTFLKRLP*ALNGK 403
           T++     + S + ++ +D    WI  F  +LP  LNG+
Sbjct: 152 TVLEILESLSSWLEKDAIDLQSQWIFCFCYKLPELLNGE 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,134
Number of Sequences: 5004
Number of extensions: 52558
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)