Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0147.Seq
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.9  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   9.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
 Frame = +3

Query: 228  PCAPHLLKPQPGGCGDQFRRCFSG-------*GGLHQN 320
            PC P    P P  C + + RC  G        GGLH N
Sbjct: 1102 PCEPGQYVPDPHNC-NAYYRCVLGELRKQYCAGGLHWN 1138


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -1

Query: 281 ELITTSAWLRLQ 246
           +++TT+AWL L+
Sbjct: 48  QILTTNAWLNLE 59


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -1

Query: 281 ELITTSAWLRLQ 246
           +++TT+AWL L+
Sbjct: 48  QILTTNAWLNLE 59


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -1

Query: 281 ELITTSAWLRLQ 246
           +++TT+AWL L+
Sbjct: 48  QILTTNAWLNLE 59


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 208 YPRRSPCPARRIY*SRS 258
           YPR   CPA  ++  RS
Sbjct: 180 YPRLQRCPAMLVFDRRS 196


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 379 PFAFGKLSNSWFCGLPGNPVSAT 447
           P + G +  S  CG  GNP+  T
Sbjct: 216 PGSLGSMGVSVPCGTSGNPLEWT 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,077
Number of Sequences: 336
Number of extensions: 3177
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)