Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0147.Seq
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   3.5  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   8.1  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   8.1  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = +1

Query: 394 KLSNSWFCGLPGNPVSATLTFYQL-VQPLLAKLSGNTASACPRAXXPHSVPPEKNARTS* 570
           +L + W    P +  S++ +  Q+ +    A+   N+ S+   +  P   PP KN  +S 
Sbjct: 25  RLQDEWNSSSPSSAPSSSSSQNQVELDEQFARSLQNSQSSS-YSLPPFDHPPSKNPTSSS 83

Query: 571 FPARRAATQRR-W--RNWK*RPP 630
              R+   Q+R W  +N+  RPP
Sbjct: 84  LSTRKRWRQKRLWSFKNFPFRPP 106


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 645 VNPDVRWSSLPVSPSALRCSTPRWKSRR 562
           ++P + +++  VSPS+L      W+SR+
Sbjct: 15  IHPALHYATYRVSPSSLHIRLSSWRSRK 42


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 430 NPVSATLTFYQLVQPLLAKLSGNTA 504
           NP SA++T     QP+  KLS N A
Sbjct: 466 NPTSASVTSQNGQQPINTKLSANAA 490


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 50  PVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAV 160
           P+I+++ +   +  +  + P  PL DG+  DT+ L V
Sbjct: 295 PLIKRMVIQKVNVAELNRKPLYPLSDGETLDTSHLQV 331


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 404  LLSLPNANGLPGLIASFQKAI-SPSSS 327
            LLS PN++   GLI+S QK + +P S+
Sbjct: 1371 LLSNPNSDAQSGLISSLQKKLYNPESN 1397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,386
Number of Sequences: 5004
Number of extensions: 52899
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)