Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0147.Seq
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20990.1 68418.m02495 molybdopterin biosynthesis CNX1 protein...    52   5e-07
At5g54660.1 68418.m06806 heat shock protein-related contains wea...    28   5.3  
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat...    28   5.3  
At3g29670.1 68416.m03740 transferase family protein similar to a...    28   7.0  
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin...    28   7.0  

>At5g20990.1 68418.m02495 molybdopterin biosynthesis CNX1 protein /
           molybdenum cofactor biosynthesis enzyme CNX1 (CNX1)
           identical to SP|Q39054 Molybdopterin biosynthesis CNX1
           protein (Molybdenum cofactor biosynthesis enzyme CNX1)
           {Arabidopsis thaliana}
          Length = 670

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +2

Query: 35  GIAEVPVIRKVRVALFSTGDELQLP-GQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGII 211
           G+  V V     VA+ STGDEL  P    LG GQI D+NR  +   + Q  C+V++LGI+
Sbjct: 181 GVTMVKVYPMPIVAILSTGDELVEPTAGTLGRGQIRDSNRAMLVAAVMQQQCKVVDLGIV 240

Query: 212 RDD 220
           RDD
Sbjct: 241 RDD 243



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
 Frame = +1

Query: 301 EADYTKTILEELGEIAFWKLAIKPGKPFAFGKL----SNSWF------CGLPGNPVSATL 450
           + D+ K +LEE G++ F K+ +KPGKP  F ++    + S         GLPGNPVS  +
Sbjct: 272 DRDFVKPLLEEKGKVYFSKVLMKPGKPLTFAEIRAKPTESMLGKTVLAFGLPGNPVSCLV 331

Query: 451 TFYQLVQPLLAKLSGNTA 504
            F   V P + +L+G T+
Sbjct: 332 CFNIFVVPTIRQLAGWTS 349


>At5g54660.1 68418.m06806 heat shock protein-related contains weak
           similarity to 17.6 kDa class I heat shock protein (HSP
           17.6) (Swiss-Prot:P13853) [Arabidopsis thaliana]
          Length = 192

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = -2

Query: 631 PVVVTSSFAIGVALQHAALEIKTSWRFFQAGRCAVXWRAGRRWR---CYRLVLPAKA 470
           PVV  ++  + V +    +EI   W   +       WR+GR W      RL LP+ A
Sbjct: 105 PVVGKNNVQVYVDINGRVMEISGQWNSNKKAATNSDWRSGRWWEHGYVRRLELPSDA 161


>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
           / citrate hydro-lyase/aconitase, putative strong
           similarity to SP|P49608 Aconitate hydratase, cytoplasmic
           (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
           {Cucurbita maxima}; contains Pfam profiles PF00330:
           Aconitase family (aconitate hydratase), PF00694:
           Aconitase C-terminal domain
          Length = 995

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 344 SPSGSWRLNQVNRSRSVNSAIAGSAACRAT 433
           +PS S   NQ NRS+S +SA+     C A+
Sbjct: 33  APSASSLRNQTNRSKSFSSALRSFRVCSAS 62


>At3g29670.1 68416.m03740 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 451

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 610 FAIGVALQHAALEIKTSWRFFQA 542
           F+IGVA  HA L+ KTS  F +A
Sbjct: 157 FSIGVAAHHAVLDGKTSSTFIKA 179


>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
           [Arabidopsis thaliana] GI:6491702; similar to myosin
           GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
           profiles: PF00063: myosin head (motor domain), PF00612:
           IQ calmodulin-binding motif; identical to cDNA myosin
           (ATM) GI:297068
          Length = 1166

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 317 KRFLKSWGRSPSGSWRLNQVNRSRSVNSAIA 409
           K+ L+SW + P+G+W L ++  +    S I+
Sbjct: 112 KKILQSWIQLPNGNWELGKILSTSGEESVIS 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,517,611
Number of Sequences: 28952
Number of extensions: 314910
Number of successful extensions: 852
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)