Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0146.Seq
(614 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060986-1|AAL28534.1| 215|Drosophila melanogaster GM14292p pro... 52 8e-07
AE014298-642|AAF45957.1| 215|Drosophila melanogaster CG11444-PA... 52 8e-07
BT024370-1|ABC86432.1| 189|Drosophila melanogaster IP07252p pro... 46 5e-05
AE014134-1632|AAF52770.1| 189|Drosophila melanogaster CG4438-PA... 46 5e-05
BT016134-1|AAV37019.1| 568|Drosophila melanogaster GH11784p pro... 28 8.7
AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protei... 28 8.7
AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair p... 28 8.7
AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA ... 28 8.7
AE014297-2463|AAF55511.1| 568|Drosophila melanogaster CG7183-PA... 28 8.7
>AY060986-1|AAL28534.1| 215|Drosophila melanogaster GM14292p
protein.
Length = 215
Score = 51.6 bits (118), Expect = 8e-07
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = -3
Query: 486 MPRGKFTNHKGRNRKFTSPEELEEQRKHDEQK 391
MPRGKF NHKGR+R FTSPEEL+++ + D +
Sbjct: 1 MPRGKFVNHKGRSRHFTSPEELQQESEEDSDQ 32
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Frame = -2
Query: 253 EVENPNRV-------VXXXXXXXXXXXLGDVEKPQLSXXXXXXXXXXXXXXAYQKLHAEG 95
E+ENPNRV + G KP+LS Y+KLHA G
Sbjct: 113 EIENPNRVTKKATQKLSAIKLDDGPAGAGGNPKPELSRREREQIEKQRARQRYEKLHAAG 172
Query: 94 KTEQ 83
KT +
Sbjct: 173 KTTE 176
>AE014298-642|AAF45957.1| 215|Drosophila melanogaster CG11444-PA
protein.
Length = 215
Score = 51.6 bits (118), Expect = 8e-07
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = -3
Query: 486 MPRGKFTNHKGRNRKFTSPEELEEQRKHDEQK 391
MPRGKF NHKGR+R FTSPEEL+++ + D +
Sbjct: 1 MPRGKFVNHKGRSRHFTSPEELQQESEEDSDQ 32
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Frame = -2
Query: 253 EVENPNRV-------VXXXXXXXXXXXLGDVEKPQLSXXXXXXXXXXXXXXAYQKLHAEG 95
E+ENPNRV + G KP+LS Y+KLHA G
Sbjct: 113 EIENPNRVTKKATQKLSAIKLDDGPAGAGGNPKPELSRREREQIEKQRARQRYEKLHAAG 172
Query: 94 KTEQ 83
KT +
Sbjct: 173 KTTE 176
>BT024370-1|ABC86432.1| 189|Drosophila melanogaster IP07252p
protein.
Length = 189
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -3
Query: 486 MPRGKFTNHKGRNRKFTSPEELEEQRKHD 400
MPRGKF ++KGR R+FTSPEEL ++ + D
Sbjct: 1 MPRGKFLSYKGRTRQFTSPEELRQESEDD 29
>AE014134-1632|AAF52770.1| 189|Drosophila melanogaster CG4438-PA
protein.
Length = 189
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -3
Query: 486 MPRGKFTNHKGRNRKFTSPEELEEQRKHD 400
MPRGKF ++KGR R+FTSPEEL ++ + D
Sbjct: 1 MPRGKFLSYKGRTRQFTSPEELRQESEDD 29
>BT016134-1|AAV37019.1| 568|Drosophila melanogaster GH11784p
protein.
Length = 568
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Frame = -3
Query: 495 NHKMPRGKFTNHKGRNRKFTSP--------EELEEQRKHDEQKKKW-RKEQ 370
N K R +NH + F P E L KHDEQ+ W RKEQ
Sbjct: 201 NTKGSRELNSNHNSDDESFIGPRPTESVFSEALSTMTKHDEQRMNWERKEQ 251
>AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protein
protein.
Length = 614
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -3
Query: 522 SLFKSITKXNHKMPRGKFTNHKGRNRKFTSPEELE----EQRKHDEQKKKWRKEQ 370
SL KSI+K + P K N R K T+ EE E E+R H +++K RKE+
Sbjct: 319 SLDKSISKEDK--PPAKEHNSSSRE-KSTAKEEKEQLRKEERSHSKEEKSRRKEK 370
>AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair
protein XRCC1 protein.
Length = 614
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -3
Query: 522 SLFKSITKXNHKMPRGKFTNHKGRNRKFTSPEELE----EQRKHDEQKKKWRKEQ 370
SL KSI+K + P K N R K T+ EE E E+R H +++K RKE+
Sbjct: 319 SLDKSISKEDK--PPAKEHNSSSRE-KSTAKEEKEQLRKEERSHSKEEKSRRKEK 370
>AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA
protein.
Length = 614
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -3
Query: 522 SLFKSITKXNHKMPRGKFTNHKGRNRKFTSPEELE----EQRKHDEQKKKWRKEQ 370
SL KSI+K + P K N R K T+ EE E E+R H +++K RKE+
Sbjct: 319 SLDKSISKEDK--PPAKEHNSSSRE-KSTAKEEKEQLRKEERSHSKEEKSRRKEK 370
>AE014297-2463|AAF55511.1| 568|Drosophila melanogaster CG7183-PA
protein.
Length = 568
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Frame = -3
Query: 495 NHKMPRGKFTNHKGRNRKFTSP--------EELEEQRKHDEQKKKW-RKEQ 370
N K R +NH + F P E L KHDEQ+ W RKEQ
Sbjct: 201 NTKGSRELNSNHNSDDESFIGPRPTESVFSEALSTMTKHDEQRMNWERKEQ 251
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,166,737
Number of Sequences: 53049
Number of extensions: 190823
Number of successful extensions: 680
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2517878700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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