Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0146.Seq
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.5  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   5.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 555 NFKSLQXLNILSLFKSITKXNHKMPRGKFTNHKGRNRKFTSPEE 424
           + K++  +    L K I +  H++ R     ++GR   F  PEE
Sbjct: 516 DIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEE 559


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 564 FNXNFKSLQXLNILSL 517
           +N N+K LQ  NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 564 FNXNFKSLQXLNILSL 517
           +N N+K LQ  NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 564 FNXNFKSLQXLNILSL 517
           +N N+K LQ  NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 564 FNXNFKSLQXLNILSL 517
           +N N+K LQ  NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 564 FNXNFKSLQXLNILSL 517
           +N N+K LQ  NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 564 FNXNFKSLQXLNILSL 517
           +N N+K LQ  NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 564 FNXNFKSLQXLNILSL 517
           +N N+K LQ  NI+++
Sbjct: 105 YNTNYKKLQYYNIINI 120


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 564 FNXNFKSLQXLNILSL 517
           +N N+K LQ  NI+++
Sbjct: 101 YNTNYKKLQYYNIINI 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,134
Number of Sequences: 438
Number of extensions: 1274
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)