Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0146.Seq
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77180.1 68414.m08991 chromatin protein family contains Pfam ...    32   0.35 
At4g26600.1 68417.m03834 nucleolar protein, putative similar to ...    31   0.80 
At3g28770.1 68416.m03591 expressed protein                             29   3.2  
At3g18990.1 68416.m02410 transcriptional factor B3 family protei...    29   3.2  
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil...    29   3.2  
At3g22104.1 68416.m02789 phototropic-responsive NPH3 protein-rel...    28   4.3  
At3g14670.1 68416.m01856 hypothetical protein                          28   4.3  
At3g05155.1 68416.m00560 sugar transporter, putative similar to ...    28   5.7  
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi...    27   9.9  

>At1g77180.1 68414.m08991 chromatin protein family contains Pfam
           domain, PF02731: SKIP/SNW domain found in chromatin
           proteins.
          Length = 613

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = -3

Query: 483 PRGKFTNH---KGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 370
           PRG + N+   +GR R+   P+E  E+R+   Q++K R+E+
Sbjct: 367 PRGDYDNYDQDRGREREREEPQETREEREKRIQREKIREER 407


>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
           SP|P46087 Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120) {Homo
           sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
           family
          Length = 671

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 489 KMPRGKFTNHKGRNRKFTSPE--ELEEQRKHDEQKKKWRKE 373
           K PR K   HKG+  K T  E   +EE RK  +++ +W+ E
Sbjct: 608 KNPRSKEI-HKGKRNKNTKTESGNVEEPRKQKKKRSQWKNE 647


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 495  NHKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKE 373
            NHK  + +       N+     E+ +E++KH+E K + ++E
Sbjct: 1075 NHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEE 1115


>At3g18990.1 68416.m02410 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 341

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = -3

Query: 528 ILSLFKSITKXNHKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRK 376
           I +LF    K     P  K    +GR +K   PEE+      D+  +   K
Sbjct: 160 IQTLFTGPVKAEEPTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPENRSK 210


>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 499

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -3

Query: 525 LSLFKSITKXNHKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 370
           + + K + +   K   G+ T      +K    EE EE+++ ++ KKK +K +
Sbjct: 421 VDVMKEVLENLEKKDEGEKTVDASEKKKKRKTEEKEEEKEEEKSKKKKKKSK 472


>At3g22104.1 68416.m02789 phototropic-responsive NPH3
           protein-related contains BTB/POZ domain,
           INTERPRO:IPR000210
          Length = 506

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = -3

Query: 477 GKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRK 376
           G+   H  RN+KF + E L+EQ++  +Q+++ ++
Sbjct: 408 GESRAHISRNQKFQAIETLDEQQQQQQQQQQQKQ 441


>At3g14670.1 68416.m01856 hypothetical protein
          Length = 232

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/60 (20%), Positives = 31/60 (51%)
 Frame = -3

Query: 549 KSLQXLNILSLFKSITKXNHKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 370
           + ++   I ++  ++ +   K    +  N +   ++ +  EE EE+ K +E+K++  KE+
Sbjct: 53  RGVEEEQIPTIITTVVEEGEKSDNNEEENSEKDEKEESEEEESEEEEKEEEEKEEEEKEE 112


>At3g05155.1 68416.m00560 sugar transporter, putative similar to
           sugar-porter family protein 1 [Arabidopsis thaliana]
           GI:14585699; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 327

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 65  SEVSARLLR--FTFSVKLLIGCSCSLAFYLFTFTS 163
           +E++ + +R  FTFS +LL  C  + A+YL  F S
Sbjct: 143 AEITPKTVRGTFTFSNQLLQNCGVATAYYLGNFMS 177


>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
           PF00010 helix-loop-helix DNA-binding domain; PMID:
           12679534; putative bHLH131 transcription factor
          Length = 1513

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 426 ELEEQRKHDEQKKKWRKEQ 370
           ++EE++   E+K KW+KEQ
Sbjct: 174 KMEEEKSQVEEKLKWKKEQ 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,568,791
Number of Sequences: 28952
Number of extensions: 96947
Number of successful extensions: 382
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)