Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0143.Seq
         (967 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   1.2  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   6.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 538  SRISTESTSKRPSPGQLKTFSTTMEPPS 621
            +R +T ST+ RP+     T  TT+ PP+
Sbjct: 1063 TRPTTTSTTTRPTTTNWPTQGTTIPPPA 1090



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 377  HWSNLTRSFPTVRPTAT 327
            HW   T +  T RPT T
Sbjct: 1182 HWQTKTTTSTTTRPTTT 1198


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 550 TESTSKRPSPGQLKTFSTTMEPP 618
           + STS  PSP      ST   PP
Sbjct: 126 SSSTSSIPSPSTTDDLSTNPTPP 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,570
Number of Sequences: 336
Number of extensions: 4804
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27306312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)