Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0143.Seq
         (967 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    30   0.42 
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    27   3.0  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    27   3.0  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   4.0  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   9.1  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    26   9.1  

>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +2

Query: 602 QRWNHRAKSQTVSH---HWSLPGSSR*RKPVFE 691
           +RW+ R KSQT+SH    +S P  SR  + VFE
Sbjct: 16  ERWSERLKSQTISHLPTDYSRPVPSRLVEAVFE 48


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 42  LAKSNAQITIKQNGYTIYQTYVSPGAFEISDLYSTSSSG 158
           LA+SN  +T+ ++   IY+T  +PG+ ++  +   S  G
Sbjct: 20  LARSNPGLTVIEHDRVIYRTASAPGSGDLPKVTLVSGGG 58


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 118 LLKLVISIPRRRAVIC*LKSKKRTAASIATAYRSPVCHYSSVRGESIR 261
           LLK  ISI   +A +  ++  K    SI T Y SP+   + +   S R
Sbjct: 122 LLKTAISIEVSKATVQAIQQIKNAGGSITTVYFSPLALRAHLHPSSFR 169


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 786 YYNFXGRRFKNVVTGEKPGVYPX*SPWGKSPFSPTGVISEKXRTXCPFQKLPP 944
           Y N  GRR   +    +P      SPWG    + T  I    +T    + +PP
Sbjct: 143 YRNGYGRRSFRIEESVQPDTMSCLSPWGTERLTATINILRSDKTAEEIRSVPP 195


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135  LYSTS-SSGDLLVEIKEADGSVNSYSV 212
            LY T  SS D  + +  ++G++NSYS+
Sbjct: 978  LYGTEVSSSDTYLNVLNSEGAINSYSL 1004


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +3

Query: 69  IKQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYS 209
           I+++   I+  + +  + E+SD  ++ SS +   E+++ + SV SYS
Sbjct: 133 IEEDMNKIHDAWYAFNSHELSDEENSDSSNEREEEVEDDNRSVESYS 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,907,605
Number of Sequences: 5004
Number of extensions: 78696
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)