Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0143.Seq
         (967 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0810 - 24817268-24817350,24817547-24817697,24818441-248185...    35   0.11 
08_02_0317 + 15705184-15705391,15706194-15706270,15706364-157064...    31   1.4  
05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048           30   3.2  
09_02_0325 + 7276650-7276770,7276979-7277055,7277146-7277188,727...    29   5.5  
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266...    29   5.5  

>06_03_0810 -
           24817268-24817350,24817547-24817697,24818441-24818542,
           24818722-24818802,24818900-24819020,24819284-24819401,
           24819514-24819637,24819898-24819963,24820117-24820407,
           24820455-24820592,24820967-24821116,24821240-24821410,
           24821543-24821746,24821880-24822104,24822461-24822595,
           24822995-24823096,24823586-24823882,24823979-24824167,
           24824581-24824628,24824872-24825070,24825501-24825730,
           24826373-24826568,24826695-24826882
          Length = 1202

 Score = 34.7 bits (76), Expect = 0.11
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 515 FPPESPGNHAFLRSQRVSVQVPAS*KLSPQRWNHRAKSQTVSHHWSLPGSSR*RKP 682
           F P+ PG    L +     + PA+ K+ P +   +A    V H WSLPG ++  KP
Sbjct: 378 FAPKLPGG---LAASLTGERSPAADKIKPVKRERQAIRPPVEHKWSLPGVAQDAKP 430


>08_02_0317 +
           15705184-15705391,15706194-15706270,15706364-15706406,
           15706507-15706564,15707576-15707645,15708409-15708876
          Length = 307

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 23/73 (31%), Positives = 31/73 (42%)
 Frame = +2

Query: 227 AITPASGANQYAVTLAKYRTNSNEQQESKFAQATLQWGGPWGTTWSGLTSGHGV*HRLTS 406
           AI P++G N      A+ R     +   +F +A  Q GGP   T  G+    GV      
Sbjct: 29  AIVPSNGGNNNPNMAARQRLRWTNELHDRFVEAVTQLGGPDRATPKGVLRIMGVPGLTIY 88

Query: 407 PVK*SHPYLYLIA 445
            VK SH   Y +A
Sbjct: 89  HVK-SHLQKYRLA 100


>05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048
          Length = 378

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 538 SRISTESTSKRPSPGQLKTFSTTMEPPSKKPNCKP 642
           SR + E+T  RP+ G L   S T  PP ++P  KP
Sbjct: 206 SRATREATRSRPAAGLLSLASPT-SPPPEQPPAKP 239


>09_02_0325 +
           7276650-7276770,7276979-7277055,7277146-7277188,
           7277276-7277333,7277922-7277991,7278202-7278670,
           7278895-7278959
          Length = 300

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 22/70 (31%), Positives = 30/70 (42%)
 Frame = +2

Query: 236 PASGANQYAVTLAKYRTNSNEQQESKFAQATLQWGGPWGTTWSGLTSGHGV*HRLTSPVK 415
           P +GAN  +   A+ R     +   +F +A  Q GGP   T  G+    GV       VK
Sbjct: 3   PDNGANNNSNLAARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVK 62

Query: 416 *SHPYLYLIA 445
            SH   Y +A
Sbjct: 63  -SHLQKYRLA 71


>01_06_0645 +
           30826267-30826307,30826403-30826454,30826580-30826659,
           30826804-30826882,30826962-30827045,30827131-30827276,
           30827362-30827628,30827825-30827907,30828162-30828271,
           30828544-30829159,30829471-30829620,30829700-30829800
          Length = 602

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +1

Query: 442 SRVNGGVKHIHH*VD--KNKFQRESRISA*ITG*SRISTESTSKRPSPGQLKTFSTTMEP 615
           SR  G  K IH   +  KNK +  S  S+   G   I+  +TS +    +    STT E 
Sbjct: 196 SREVGSFKDIHTGTEWKKNKKETVSNYSSNREGSKEITNSATSYKSKKSERHGRSTTSEA 255

Query: 616 PSKK 627
           PS K
Sbjct: 256 PSSK 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,673,375
Number of Sequences: 37544
Number of extensions: 600334
Number of successful extensions: 1333
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)