Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0143.Seq
         (967 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    32   0.53 
AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical ...    29   6.5  
AY943817-1|AAY18583.1|  703|Caenorhabditis elegans signal transd...    28   8.7  
AL132952-23|CAN99759.1|  703|Caenorhabditis elegans Hypothetical...    28   8.7  
AL132952-22|CAN86928.1|  567|Caenorhabditis elegans Hypothetical...    28   8.7  
AL132952-21|CAB61149.2|  706|Caenorhabditis elegans Hypothetical...    28   8.7  

>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = -3

Query: 287  WFCISPVSPRIDSPLTLE*WHTGERYAVAIDAAVRFFDFN*QITARRRGIEITNFKSTRR 108
            +F + P SP++      E W T E+ +  ID  V F  FN + T RR  IE+     T R
Sbjct: 1664 FFVLYPDSPKVYYYEDFENWKTAEKPSGCID-LVDFKSFNLEQTGRRGLIELHMKNKTHR 1722

Query: 107  YIS 99
             +S
Sbjct: 1723 LLS 1725


>AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical
           protein T01G6.6 protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 563 LVDSVEMRDYPVIQAEILLSRWNL-FLST*WWMCF 462
           ++  + M  YPVI  +  L  W L FL T  W+ F
Sbjct: 171 MLTKIPMMQYPVINKQFFLHFWELDFLKTAKWLSF 205


>AY943817-1|AAY18583.1|  703|Caenorhabditis elegans signal
           transducer and activatorof transcription STA-1 protein.
          Length = 703

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
 Frame = -3

Query: 662 IPVVTNDGLQFGFLLGGSIVVEKVFNWPG------LGRLLVDSVEMRDYPVIQAEILLSR 501
           I +  NDG  F  +L   ++ EK+F+W        +G    +  ++ D   I+ E L  +
Sbjct: 88  IVIKLNDGTNFATMLQTQLIGEKLFSWKNAQKLAQIGMPFDNREQLLDEIQIEFEFLADQ 147

Query: 500 -WNLFLST*WWMCFTPPLTRLSGTSKDATI 414
            W L + + W +       +L+     ATI
Sbjct: 148 NWQLNMFSCWMLDLLRRAPQLNDGLAQATI 177


>AL132952-23|CAN99759.1|  703|Caenorhabditis elegans Hypothetical
           protein Y51H4A.17c protein.
          Length = 703

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
 Frame = -3

Query: 662 IPVVTNDGLQFGFLLGGSIVVEKVFNWPG------LGRLLVDSVEMRDYPVIQAEILLSR 501
           I +  NDG  F  +L   ++ EK+F+W        +G    +  ++ D   I+ E L  +
Sbjct: 88  IVIKLNDGTNFATMLQTQLIGEKLFSWKNAQKLAQIGMPFDNREQLLDEIQIEFEFLADQ 147

Query: 500 -WNLFLST*WWMCFTPPLTRLSGTSKDATI 414
            W L + + W +       +L+     ATI
Sbjct: 148 NWQLNMFSCWMLDLLRRAPQLNDGLAQATI 177


>AL132952-22|CAN86928.1|  567|Caenorhabditis elegans Hypothetical
           protein Y51H4A.17b protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
 Frame = -3

Query: 662 IPVVTNDGLQFGFLLGGSIVVEKVFNWPG------LGRLLVDSVEMRDYPVIQAEILLSR 501
           I +  NDG  F  +L   ++ EK+F+W        +G    +  ++ D   I+ E L  +
Sbjct: 88  IVIKLNDGTNFATMLQTQLIGEKLFSWKNAQKLAQIGMPFDNREQLLDEIQIEFEFLADQ 147

Query: 500 -WNLFLST*WWMCFTPPLTRLSGTSKDATI 414
            W L + + W +       +L+     ATI
Sbjct: 148 NWQLNMFSCWMLDLLRRAPQLNDGLAQATI 177


>AL132952-21|CAB61149.2|  706|Caenorhabditis elegans Hypothetical
           protein Y51H4A.17a protein.
          Length = 706

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
 Frame = -3

Query: 662 IPVVTNDGLQFGFLLGGSIVVEKVFNWPG------LGRLLVDSVEMRDYPVIQAEILLSR 501
           I +  NDG  F  +L   ++ EK+F+W        +G    +  ++ D   I+ E L  +
Sbjct: 88  IVIKLNDGTNFATMLQTQLIGEKLFSWKNAQKLAQIGMPFDNREQLLDEIQIEFEFLADQ 147

Query: 500 -WNLFLST*WWMCFTPPLTRLSGTSKDATI 414
            W L + + W +       +L+     ATI
Sbjct: 148 NWQLNMFSCWMLDLLRRAPQLNDGLAQATI 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,060,709
Number of Sequences: 27780
Number of extensions: 465809
Number of successful extensions: 987
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)