Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0143.Seq
         (967 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    33   0.38 
At4g35880.1 68417.m05095 aspartyl protease family protein contai...    31   1.1  
At3g19990.1 68416.m02529 expressed protein                             29   6.1  

>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 374 WSNLTRSFPTVRPTATWPGQICSPAVHYYWFCISPVS 264
           W++ T S+ T  PT+T  G+  +   H+YW    P S
Sbjct: 768 WNSCTSSYTTATPTSTHGGKKKAVKAHFYWVTREPGS 804


>At4g35880.1 68417.m05095 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 524

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 449 TRLSGTSKDATI*LATSGGVKRHAHWSNLTRSFPTVRPTATWPGQI 312
           T ++GT+K A +  A + G+K H + S L ++  T+  + + P QI
Sbjct: 459 TTVAGTNKTAAVAPAMAAGIKTHNNSSELHKTNQTISKSNSSPNQI 504


>At3g19990.1 68416.m02529 expressed protein
          Length = 425

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +2

Query: 263 VTLAKYRTNSNEQQESKFAQATLQWGGPWG--TTWSG 367
           V L K R    E++  K     LQWG PW    +W G
Sbjct: 358 VYLGKKRFKEAEREAEKGLLLLLQWGSPWDKRMSWEG 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,148,461
Number of Sequences: 28952
Number of extensions: 439521
Number of successful extensions: 990
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2334107520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)