Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0142.Seq
(961 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P0ABT4 Cluster: DNA protection during starvation protei... 148 2e-34
UniRef50_Q5FT12 Cluster: Starvation-inducible DNA-binding protei... 75 3e-12
UniRef50_A0VUG7 Cluster: Ferritin, Dps family protein; n=4; Rhod... 56 1e-06
UniRef50_Q1QCT5 Cluster: Ferritin and Dps; n=1; Psychrobacter cr... 55 2e-06
UniRef50_Q8NLE3 Cluster: Starvation-inducible DNA-binding protei... 55 3e-06
UniRef50_P0C558 Cluster: DNA protection during starvation protei... 51 5e-05
UniRef50_Q2J754 Cluster: Ferritin and Dps; n=4; Actinomycetales|... 50 9e-05
UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1; ... 50 1e-04
UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular organ... 50 1e-04
UniRef50_Q07GK9 Cluster: DNA protection during starvation protei... 50 1e-04
UniRef50_A0YVW1 Cluster: Ferritin and Dps; n=1; Lyngbya sp. PCC ... 50 1e-04
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L... 50 1e-04
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet... 50 1e-04
UniRef50_Q0RZJ1 Cluster: Starvation-response DNA binding protein... 49 2e-04
UniRef50_Q0G1M6 Cluster: DNA protection during starvation condit... 49 2e-04
UniRef50_Q8G6M1 Cluster: Putative uncharacterized protein; n=2; ... 48 3e-04
UniRef50_Q8YXN9 Cluster: DNA-binding protein, starvation-inducib... 48 4e-04
UniRef50_Q7USL2 Cluster: Probable DNA protection during starvati... 48 4e-04
UniRef50_Q82K99 Cluster: Putative starvation-induced DNA protect... 47 6e-04
UniRef50_A1G5Q5 Cluster: Ferritin and Dps; n=2; Salinispora|Rep:... 45 0.003
UniRef50_A4AGQ3 Cluster: Starvation-induced DNA-binding protein;... 44 0.006
UniRef50_Q3XZS4 Cluster: Dps family protein; n=1; Enterococcus f... 44 0.008
UniRef50_Q47953 Cluster: Fine tangled pili major subunit; n=5; P... 44 0.008
UniRef50_A7LND0 Cluster: DNA protection during starvation protei... 43 0.010
UniRef50_A3ZU64 Cluster: Probable DNA protection during starvati... 43 0.013
UniRef50_Q1DDZ6 Cluster: Dps family protein; n=2; Cystobacterine... 42 0.018
UniRef50_A7HEE4 Cluster: Ferritin Dps family protein; n=4; Cysto... 42 0.018
UniRef50_Q2SE45 Cluster: DNA-binding ferritin-like protein; n=1;... 42 0.023
UniRef50_Q83GB7 Cluster: Stress induced DNA-binding protein; n=2... 41 0.054
UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:... 41 0.054
UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3; Eukaryo... 39 0.16
UniRef50_P80725 Cluster: DNA protection during starvation protei... 38 0.29
UniRef50_Q6A5X2 Cluster: Starvation-inducible DNA-binding protei... 38 0.38
UniRef50_Q4Q6B4 Cluster: Putative uncharacterized protein; n=3; ... 38 0.38
UniRef50_Q9RZN1 Cluster: DNA protection during starvation protei... 37 0.66
UniRef50_Q4Q642 Cluster: Putative uncharacterized protein; n=2; ... 37 0.88
UniRef50_A6NYN4 Cluster: Putative uncharacterized protein; n=1; ... 36 1.2
UniRef50_A2UAM8 Cluster: ABC transporter related; n=2; Firmicute... 36 1.2
UniRef50_A7MN76 Cluster: Putative uncharacterized protein; n=1; ... 36 1.5
UniRef50_A0NKQ6 Cluster: Non-heme iron-containing ferritin; n=4;... 36 1.5
UniRef50_Q9KWH3 Cluster: DNA protection during starvation protei... 36 2.0
UniRef50_Q02WA6 Cluster: DNA-binding ferritin-like protein; n=3;... 35 3.5
UniRef50_A0U589 Cluster: Beta-lactamase; n=8; Burkholderiaceae|R... 35 3.5
UniRef50_Q8J1F4 Cluster: Yib1; n=1; Eremothecium gossypii|Rep: Y... 35 3.5
UniRef50_Q9A4G1 Cluster: Dps family protein; n=3; Alphaproteobac... 34 4.7
UniRef50_Q50378 Cluster: Ferric exochelin biosynthesis; n=3; Myc... 34 6.2
UniRef50_Q9RS64 Cluster: DNA protection during starvation protei... 34 6.2
UniRef50_Q8RPQ1 Cluster: DNA protection during starvation protei... 34 6.2
UniRef50_Q9A7L7 Cluster: Sensor protein; n=1; Caulobacter vibrio... 33 8.2
UniRef50_Q74KF5 Cluster: Non-heme iron-containing ferritin; n=2;... 33 8.2
UniRef50_Q4A6A8 Cluster: Putative neutrophil activating protein ... 33 8.2
UniRef50_Q32TH2 Cluster: Tripartite hemolysin BL component L1; n... 33 8.2
UniRef50_Q27276 Cluster: MEC-5 precursor; n=2; Caenorhabditis|Re... 33 8.2
UniRef50_P0A3A7 Cluster: Uncharacterized low temperature-induced... 33 8.2
>UniRef50_P0ABT4 Cluster: DNA protection during starvation protein;
n=54; cellular organisms|Rep: DNA protection during
starvation protein - Shigella flexneri
Length = 167
Score = 148 bits (359), Expect = 2e-34
Identities = 72/72 (100%), Positives = 72/72 (100%)
Frame = +2
Query: 293 MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFI 472
MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFI
Sbjct: 1 MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFI 60
Query: 473 AVHEMLDGFRTA 508
AVHEMLDGFRTA
Sbjct: 61 AVHEMLDGFRTA 72
Score = 115 bits (277), Expect = 2e-24
Identities = 54/55 (98%), Positives = 55/55 (100%)
Frame = +1
Query: 508 MIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAI 672
+IDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAI
Sbjct: 73 LIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAI 127
>UniRef50_Q5FT12 Cluster: Starvation-inducible DNA-binding protein;
n=2; Acetobacteraceae|Rep: Starvation-inducible
DNA-binding protein - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 179
Score = 74.9 bits (176), Expect = 3e-12
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = +2
Query: 341 TRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTA 508
T+N+ +D+ K +++ LN ++ IDL+LITKQAHWN++G FI VHEMLDGFR++
Sbjct: 10 TQNNTADNTKNVSIQTLNARLSDLIDLALITKQAHWNLKGPQFIGVHEMLDGFRSS 65
Score = 62.1 bits (144), Expect = 2e-08
Identities = 29/49 (59%), Positives = 34/49 (69%)
Frame = +1
Query: 523 DTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYA 669
DT+AERAVQLGG ALGT Q + + K YP +I+ V DHL L DRYA
Sbjct: 71 DTVAERAVQLGGTALGTVQDVAKNSACKPYPTNIYRVADHLAALIDRYA 119
>UniRef50_A0VUG7 Cluster: Ferritin, Dps family protein; n=4;
Rhodobacteraceae|Rep: Ferritin, Dps family protein -
Dinoroseobacter shibae DFL 12
Length = 160
Score = 56.4 bits (130), Expect = 1e-06
Identities = 24/54 (44%), Positives = 38/54 (70%)
Frame = +1
Query: 505 RMIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRY 666
R+ D DTMAERAV LGG A GT +V+ ++ L++YPL++ + +H++ L R+
Sbjct: 60 RLRDGADTMAERAVILGGYAKGTAEVVAEQSTLEAYPLELSEISEHIEHLKARF 113
Score = 54.0 bits (124), Expect = 5e-06
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +2
Query: 353 VSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
++ + V+LLN ++ I+L+L KQAHWN++G FI VHE+LD
Sbjct: 9 LNQDTRAQVVDLLNENLVNVINLTLAVKQAHWNLKGRGFIGVHELLD 55
>UniRef50_Q1QCT5 Cluster: Ferritin and Dps; n=1; Psychrobacter
cryohalolentis K5|Rep: Ferritin and Dps - Psychrobacter
cryohalolentis (strain K5)
Length = 165
Score = 55.2 bits (127), Expect = 2e-06
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +2
Query: 353 VSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
+ D+ K ++LLN + IDLS+ +KQ HWN++G FI VH++LD
Sbjct: 9 IDDATAKKMIDLLNANLANLIDLSMDSKQCHWNLQGTGFIGVHQLLD 55
Score = 49.2 bits (112), Expect = 2e-04
Identities = 23/54 (42%), Positives = 36/54 (66%)
Frame = +1
Query: 505 RMIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRY 666
R+ + DT+AER V LGG A G ++ + + L++YP DI +V H++EL +RY
Sbjct: 60 RLTEAYDTVAERIVILGGKANGISKRVVEDSILETYPTDITDVDQHVRELTNRY 113
>UniRef50_Q8NLE3 Cluster: Starvation-inducible DNA-binding protein;
n=4; Corynebacterium|Rep: Starvation-inducible
DNA-binding protein - Corynebacterium glutamicum
(Brevibacterium flavum)
Length = 165
Score = 54.8 bits (126), Expect = 3e-06
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +2
Query: 338 YTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
YT +++++ K ++ L ++ + DL LI K HWN+ G NFIAVHEMLD
Sbjct: 4 YTVPGINENDAKQLIDGLQERLTDYNDLHLILKHVHWNVTGPNFIAVHEMLD 55
>UniRef50_P0C558 Cluster: DNA protection during starvation protein;
n=23; Bacteria|Rep: DNA protection during starvation
protein - Mycobacterium smegmatis
Length = 183
Score = 50.8 bits (116), Expect = 5e-05
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +2
Query: 338 YTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
+T +SD + +LL +Q+ + DL L K HWN+ G NFI VHEM+D
Sbjct: 4 FTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEMID 55
>UniRef50_Q2J754 Cluster: Ferritin and Dps; n=4;
Actinomycetales|Rep: Ferritin and Dps - Frankia sp.
(strain CcI3)
Length = 155
Score = 50.0 bits (114), Expect = 9e-05
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +2
Query: 344 RNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
R+ +SD + T E L +I IDLSL KQ HWN+ G F +VH LD
Sbjct: 5 RSPLSDGARSVTGEALQGTLIDLIDLSLSAKQLHWNVTGRTFRSVHRQLD 54
>UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1;
Erwinia amylovora|Rep: Putative uncharacterized protein
- Erwinia amylovora (Fire blight bacteria)
Length = 123
Score = 49.6 bits (113), Expect = 1e-04
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +1
Query: 736 LQRRDWXKPALTQLNRLAAHSPFRQLGVIAKKARTDWPSPTVAPL 870
LQRRDW P +TQLNRLAAH PF +++ARTD PS + L
Sbjct: 72 LQRRDWENPGVTQLNRLAAHPPFASWR-NSEEARTDRPSQQLRXL 115
>UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular
organisms|Rep: LacZ-alpha peptide - Escherichia coli
Length = 90
Score = 49.6 bits (113), Expect = 1e-04
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +1
Query: 736 LQRRDWXKPALTQLNRLAAHSPFRQLGVIAKKARTDWPSPTVAPL 870
LQRRDW P +TQLNRLAAH PF +++ARTD PS + L
Sbjct: 26 LQRRDWENPGVTQLNRLAAHPPFASWR-NSEEARTDRPSQQLRSL 69
>UniRef50_Q07GK9 Cluster: DNA protection during starvation protein,
putative; n=1; Roseobacter denitrificans OCh 114|Rep:
DNA protection during starvation protein, putative -
Roseobacter denitrificans (strain ATCC 33942 / OCh 114)
(Erythrobactersp. (strain OCh 114)) (Roseobacter
denitrificans)
Length = 167
Score = 49.6 bits (113), Expect = 1e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +2
Query: 338 YTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
+TR ++D+ +K ++LL R + IDL L KQAHW +R F +HE D
Sbjct: 3 HTRLKLADNTRKTAIDLLQRTLADAIDLRLAVKQAHWTIRDPRFQQLHEFFD 54
Score = 47.2 bits (107), Expect = 6e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +1
Query: 514 DHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIEG 678
+ +DTMAER LGGV G + + L Y D+ + DHL+ LADR+A G
Sbjct: 62 EEIDTMAERIATLGGVPDGRAIAVGQSSRLDPYGTDVVSGDDHLEALADRFATLG 116
>UniRef50_A0YVW1 Cluster: Ferritin and Dps; n=1; Lyngbya sp. PCC
8106|Rep: Ferritin and Dps - Lyngbya sp. PCC 8106
Length = 144
Score = 49.6 bits (113), Expect = 1e-04
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +1
Query: 517 HLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAI 672
++D +AER LGG A+GT +V + + L YP D+ + QDH+ LADR A+
Sbjct: 72 YVDMVAERVTALGGFAMGTARVAATDSILPEYPFDLLDGQDHVIALADRLAM 123
Score = 47.6 bits (108), Expect = 5e-04
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +2
Query: 326 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
T L +R D S+ ++ +LN + +DL KQAHWN++G NF ++H + D
Sbjct: 8 TRLYPSRIDFSEGTRQEVAAILNGTLATTLDLKTQVKQAHWNVKGMNFYSLHTLFD 63
>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
protein - Phage M13mp18
Length = 102
Score = 49.6 bits (113), Expect = 1e-04
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +1
Query: 736 LQRRDWXKPALTQLNRLAAHSPFRQLGVIAKKARTDWPSPTVAPL 870
LQRRDW P +TQLNRLAAH PF +++ARTD PS + L
Sbjct: 30 LQRRDWENPGVTQLNRLAAHPPFASWR-NSEEARTDRPSQQLRSL 73
>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
Beta-galactosidase - Escherichia coli (strain K12)
Length = 1024
Score = 49.6 bits (113), Expect = 1e-04
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +1
Query: 736 LQRRDWXKPALTQLNRLAAHSPFRQLGVIAKKARTDWPSPTVAPL 870
LQRRDW P +TQLNRLAAH PF +++ARTD PS + L
Sbjct: 12 LQRRDWENPGVTQLNRLAAHPPFASWR-NSEEARTDRPSQQLRSL 55
>UniRef50_Q0RZJ1 Cluster: Starvation-response DNA binding protein;
n=5; Actinomycetales|Rep: Starvation-response DNA
binding protein - Rhodococcus sp. (strain RHA1)
Length = 173
Score = 49.2 bits (112), Expect = 2e-04
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +2
Query: 365 EKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRT 505
+++ + L V+ IDLSLI KQAHWN+ G +F+AVH LD T
Sbjct: 14 QQRIAGKALQGTVVDLIDLSLIAKQAHWNVIGPHFLAVHPSLDELAT 60
>UniRef50_Q0G1M6 Cluster: DNA protection during starvation
conditions; n=2; Aurantimonadaceae|Rep: DNA protection
during starvation conditions - Fulvimarina pelagi
HTCC2506
Length = 146
Score = 49.2 bits (112), Expect = 2e-04
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +2
Query: 380 VELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
V+LL + +DL+ TKQAHWN++G NFIAVH++ D
Sbjct: 2 VQLLQTHLATALDLTYQTKQAHWNVKGLNFIAVHKLFD 39
Score = 49.2 bits (112), Expect = 2e-04
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +1
Query: 514 DHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYA 669
+ +D +AER LGG A GT Q + T L YPLD+ + + HL+ L+D YA
Sbjct: 47 EFVDDIAERLTALGGQAHGTVQAASENTLLDPYPLDLIDSEAHLRRLSDSYA 98
>UniRef50_Q8G6M1 Cluster: Putative uncharacterized protein; n=2;
Bifidobacterium longum|Rep: Putative uncharacterized
protein - Bifidobacterium longum
Length = 159
Score = 48.4 bits (110), Expect = 3e-04
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +2
Query: 350 DVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
D + SEK + +L ++ Q + +L+ K AHWN+ G NFIAVHEMLD
Sbjct: 11 DEAASEK--AIAILQNRLSQEQEAALVLKHAHWNVTGPNFIAVHEMLD 56
>UniRef50_Q8YXN9 Cluster: DNA-binding protein, starvation-inducible;
n=10; Bacteria|Rep: DNA-binding protein,
starvation-inducible - Anabaena sp. (strain PCC 7120)
Length = 188
Score = 48.0 bits (109), Expect = 4e-04
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +2
Query: 323 ATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
++ L TR D+ ++ V +LN+ + +DL KQAHWN++G +F +HE+ D
Sbjct: 7 SSRLYPTRIDIPAEKRVQIVAILNQTLAATLDLKTQAKQAHWNVKGTDFYQLHELFD 63
Score = 46.4 bits (105), Expect = 0.001
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +1
Query: 514 DHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYA 669
+ +D +AER LGG A+GT + + L +P DI + Q+++ LADRYA
Sbjct: 71 EFVDLVAERVTALGGYAVGTARAAAKNSILPEFPFDILDSQEYVAALADRYA 122
>UniRef50_Q7USL2 Cluster: Probable DNA protection during starvation
protein; n=1; Pirellula sp.|Rep: Probable DNA protection
during starvation protein - Rhodopirellula baltica
Length = 162
Score = 48.0 bits (109), Expect = 4e-04
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +2
Query: 317 SKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
S T + R+ + D LL + IDL+L+ KQAHWN+ G NF ++H LD
Sbjct: 2 STTTKTQFKRDILQDETNAEVTALLQDNLTNLIDLALLMKQAHWNVVGPNFRSIHLQLD 60
>UniRef50_Q82K99 Cluster: Putative starvation-induced DNA protecting
protein; n=2; Streptomyces|Rep: Putative
starvation-induced DNA protecting protein - Streptomyces
avermitilis
Length = 156
Score = 47.2 bits (107), Expect = 6e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +2
Query: 344 RNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
++ + D++ K E L ++ +DLSL+ KQ HWN+ G F ++H LD
Sbjct: 5 KSPLPDADLKTVAEALQGALVDLVDLSLVAKQVHWNVIGPRFRSIHLQLD 54
>UniRef50_A1G5Q5 Cluster: Ferritin and Dps; n=2; Salinispora|Rep:
Ferritin and Dps - Salinispora arenicola CNS205
Length = 194
Score = 44.8 bits (101), Expect = 0.003
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +2
Query: 386 LLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
+L + ++ +DL+L+ KQAHWN+ G F+ +H+ LD
Sbjct: 59 VLQQTLVDLLDLTLLAKQAHWNLTGPRFLPLHQQLD 94
>UniRef50_A4AGQ3 Cluster: Starvation-induced DNA-binding protein;
n=4; Actinobacteria (class)|Rep: Starvation-induced
DNA-binding protein - marine actinobacterium PHSC20C1
Length = 162
Score = 44.0 bits (99), Expect = 0.006
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +2
Query: 383 ELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
+ L V LS+ KQAHW++RGANF AVHE+LD
Sbjct: 22 QFLGPVVTDLTALSIDGKQAHWHVRGANFQAVHELLD 58
>UniRef50_Q3XZS4 Cluster: Dps family protein; n=1; Enterococcus
faecium DO|Rep: Dps family protein - Enterococcus
faecium DO
Length = 98
Score = 43.6 bits (98), Expect = 0.008
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 377 TVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGF 499
T E+LN+ V +S++ Q HW MRG F+ +H M+D F
Sbjct: 6 TKEVLNQLVADLSQMSVVVHQTHWYMRGPGFLTLHPMMDEF 46
>UniRef50_Q47953 Cluster: Fine tangled pili major subunit; n=5;
Pasteurellaceae|Rep: Fine tangled pili major subunit -
Haemophilus ducreyi
Length = 189
Score = 43.6 bits (98), Expect = 0.008
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +2
Query: 383 ELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
E L ++ +L+LI K AHWN+ G FIAVHEMLD
Sbjct: 45 EALQMRLQGLNELALILKHAHWNVVGPQFIAVHEMLD 81
>UniRef50_A7LND0 Cluster: DNA protection during starvation protein;
n=3; Lactobacillus reuteri|Rep: DNA protection during
starvation protein - Lactobacillus reuteri
Length = 155
Score = 43.2 bits (97), Expect = 0.010
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 377 TVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGF 499
T E LN+ V +++I Q HW MRG NF+ +H ++D F
Sbjct: 6 TKETLNQLVADLSQMAMIIHQTHWYMRGTNFLKLHPLMDQF 46
>UniRef50_A3ZU64 Cluster: Probable DNA protection during starvation
protein; n=1; Blastopirellula marina DSM 3645|Rep:
Probable DNA protection during starvation protein -
Blastopirellula marina DSM 3645
Length = 163
Score = 42.7 bits (96), Expect = 0.013
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 344 RNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
R + + + + L ++ IDL+L KQAHWN+RG F AVH LD
Sbjct: 8 REILPTNTRNEVAQQLQSSLVDQIDLALQAKQAHWNVRGLGFRAVHLHLD 57
>UniRef50_Q1DDZ6 Cluster: Dps family protein; n=2;
Cystobacterineae|Rep: Dps family protein - Myxococcus
xanthus (strain DK 1622)
Length = 183
Score = 42.3 bits (95), Expect = 0.018
Identities = 23/52 (44%), Positives = 28/52 (53%)
Frame = +1
Query: 523 DTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIEG 678
D AERA LGG A GT ++ + L Y L + DHLK L DR+A G
Sbjct: 66 DEFAERAGTLGGYAEGTIRLAAKNSELPEYDLKAVDGDDHLKALVDRFARYG 117
Score = 40.7 bits (91), Expect = 0.054
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 368 KKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
++ ++ LN + IDL KQAHWN+RG +F + HE+ D
Sbjct: 14 REELIDSLNTLLADAIDLHWQIKQAHWNIRGRHFYSRHELFD 55
>UniRef50_A7HEE4 Cluster: Ferritin Dps family protein; n=4;
Cystobacterineae|Rep: Ferritin Dps family protein -
Anaeromyxobacter sp. Fw109-5
Length = 158
Score = 42.3 bits (95), Expect = 0.018
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 517 HLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAI 672
H D++AERAV LG A GT + + + L YP + DH++ LADR +
Sbjct: 63 HDDSVAERAVTLGAKAYGTARHVAGASRLPEYPQETTRDLDHVRLLADRIEV 114
Score = 38.3 bits (85), Expect = 0.29
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 347 NDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGF 499
N + + ++ LN + +DL K AHWN++G +F A+H +L+ F
Sbjct: 6 NPLPEESRRRIAAALNEVLADGLDLHGQLKVAHWNVKGPHFAALHPLLETF 56
>UniRef50_Q2SE45 Cluster: DNA-binding ferritin-like protein; n=1;
Hahella chejuensis KCTC 2396|Rep: DNA-binding
ferritin-like protein - Hahella chejuensis (strain KCTC
2396)
Length = 167
Score = 41.9 bits (94), Expect = 0.023
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 317 SKATNLLYTRNDVSDSEKKA--TVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEML 490
+K +L T D+ E KA + L R + L L T+ AHWN+RG +F A+HE+
Sbjct: 5 AKKLDLTATSPDMGIKESKADSVADKLARVLADTYSLYLYTQYAHWNVRGMSFFALHELF 64
Query: 491 D 493
+
Sbjct: 65 E 65
>UniRef50_Q83GB7 Cluster: Stress induced DNA-binding protein; n=2;
Tropheryma whipplei|Rep: Stress induced DNA-binding
protein - Tropheryma whipplei (strain Twist) (Whipple's
bacillus)
Length = 167
Score = 40.7 bits (91), Expect = 0.054
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 383 ELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
+ L V+ LS+ KQ HW++RG NFIA+H +LD
Sbjct: 27 QFLGPIVVNLTALSVDFKQLHWHVRGGNFIALHRLLD 63
>UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:
Beta-galactosidase - Yersinia pseudotuberculosis
Length = 1066
Score = 40.7 bits (91), Expect = 0.054
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +1
Query: 736 LQRRDWXKPALTQLNRLAAHSPFRQLGVIAKKARTDWPSP 855
L RRDW P +TQ +RL AH PF + + A+ D PSP
Sbjct: 19 LSRRDWENPQITQYHRLEAHPPFHSWRDV-ESAQKDRPSP 57
>UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3;
Eukaryota|Rep: beta-galactosidase - Entamoeba
histolytica HM-1:IMSS
Length = 86
Score = 39.1 bits (87), Expect = 0.16
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = +2
Query: 737 YNVVTGXNLR*PNLIALQHIPL 802
YNVVTG L PNLIALQHIPL
Sbjct: 10 YNVVTGKTLALPNLIALQHIPL 31
>UniRef50_P80725 Cluster: DNA protection during starvation protein;
n=13; Listeria|Rep: DNA protection during starvation
protein - Listeria innocua
Length = 156
Score = 38.3 bits (85), Expect = 0.29
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 377 TVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
T E LN QV ++ Q HW MRG NF +HE +D
Sbjct: 9 TKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMD 47
>UniRef50_Q6A5X2 Cluster: Starvation-inducible DNA-binding protein
or fine tangled pili major subunit; n=14; Actinobacteria
(class)|Rep: Starvation-inducible DNA-binding protein or
fine tangled pili major subunit - Propionibacterium
acnes
Length = 176
Score = 37.9 bits (84), Expect = 0.38
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +2
Query: 341 TRNDVSDSEKKATVEL---LNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
T+ + ++S KA+ L L + ++ FI L L+ K AHWN+ G NF +H LD
Sbjct: 16 TKLENAESGFKASETLAANLQKVLVNFIALELVGKHAHWNIVGPNFRDLHLNLD 69
>UniRef50_Q4Q6B4 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1630
Score = 37.9 bits (84), Expect = 0.38
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 687 YPNSPYSESYYIHWASFTTS*LGKTCVNPT*SPCSTFPFSPAGGNSE-EGPHRLAFPNSC 863
YP ++ Y HW LG+ CV P+ SPCS F G+ E +G H++ +C
Sbjct: 312 YPGGSWT---YSHWWLSRPLVLGRACVPPSPSPCSRFAHEDIRGHVEDDGVHQVPHDPTC 368
Query: 864 A 866
A
Sbjct: 369 A 369
>UniRef50_Q9RZN1 Cluster: DNA protection during starvation protein
2; n=2; Deinococcus radiodurans|Rep: DNA protection
during starvation protein 2 - Deinococcus radiodurans
Length = 241
Score = 37.1 bits (82), Expect = 0.66
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 371 KATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEML 490
K +V+ L + + L L TKQAHWN+ G + +HE+L
Sbjct: 76 KKSVQALQNTLTELQALQLQTKQAHWNVSGTLWYTLHELL 115
>UniRef50_Q4Q642 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 768
Score = 36.7 bits (81), Expect = 0.88
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Frame = +3
Query: 552 GRCSSGDHSSYQQQNPAE-KLP-----AGHPQRSGSPERTG*PLRNRGGARYPNSPYSES 713
G S HSSY N + ++P A H +R SPE P + + P S
Sbjct: 155 GPTESSSHSSYFTPNMSGFEMPPDLGFAAHLERVASPELRASPSDSPTPVQRPLLAVSPV 214
Query: 714 YYIHW--ASFTTS*LGKTCVNPT*SPCSTFPFSPAGGNSEEGPHRLAFPNSCAP 869
HW A + L T V+PT P + P+SP N+ GP + N C+P
Sbjct: 215 ENPHWDGAMLPAAALPVTAVSPT-VPVAPSPYSPFAQNASTGPKK-PTGNWCSP 266
>UniRef50_A6NYN4 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 398
Score = 36.3 bits (80), Expect = 1.2
Identities = 24/75 (32%), Positives = 36/75 (48%)
Frame = +1
Query: 502 HRMIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIEGG 681
H ++D + + AV G A G + V+N+ + +Y L HN Q H + DR +
Sbjct: 32 HLIMDGNKSYLKSAVIYGANASGKSNVLNAFWFMVNYVLTSHNQQLH--KTIDRSPFKFD 89
Query: 682 PGTPIRPIVSRITFT 726
P TP RP + FT
Sbjct: 90 PETPTRPSSFEVIFT 104
>UniRef50_A2UAM8 Cluster: ABC transporter related; n=2;
Firmicutes|Rep: ABC transporter related - Bacillus
coagulans 36D1
Length = 506
Score = 36.3 bits (80), Expect = 1.2
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 571 TTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIEGGPGTPIRPI 705
T +I K P KS+ +DI + ++E++DRY ++ P I I
Sbjct: 97 TENIILGKEPKKSFTIDIKKAEQQVREISDRYGLDVDPQAKISDI 141
>UniRef50_A7MN76 Cluster: Putative uncharacterized protein; n=1;
Enterobacter sakazakii ATCC BAA-894|Rep: Putative
uncharacterized protein - Enterobacter sakazakii ATCC
BAA-894
Length = 1043
Score = 35.9 bits (79), Expect = 1.5
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +1
Query: 736 LQRRDWXKPALTQLNRLAAHSPFRQLGVIAKKARTDWPSPTVAPL 870
L R DW PA+T +NRL +H+P A +AR PS V L
Sbjct: 22 LARNDWQNPAITSVNRLPSHTPLHGWR-DADRARRGEPSDAVLSL 65
>UniRef50_A0NKQ6 Cluster: Non-heme iron-containing ferritin; n=4;
Lactobacillales|Rep: Non-heme iron-containing ferritin -
Oenococcus oeni ATCC BAA-1163
Length = 170
Score = 35.9 bits (79), Expect = 1.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 389 LNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGF 499
LN+ + L + +Q HW MRG NF +H ++D +
Sbjct: 25 LNQLIADISQLKVNVQQTHWYMRGENFFRLHPLMDEY 61
>UniRef50_Q9KWH3 Cluster: DNA protection during starvation protein;
n=64; Lactobacillales|Rep: DNA protection during
starvation protein - Streptococcus mutans
Length = 175
Score = 35.5 bits (78), Expect = 2.0
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +2
Query: 299 TAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAV 478
T + ++ ++++ +S + T +LN+ V + I Q HW MRG+ F+ +
Sbjct: 2 TNTITENIYASIIHQVEKKENSGNEKTKAVLNQAVADLSKAASIVHQVHWYMRGSGFLYL 61
Query: 479 HEMLD 493
H +D
Sbjct: 62 HPKMD 66
>UniRef50_Q02WA6 Cluster: DNA-binding ferritin-like protein; n=3;
Lactococcus lactis|Rep: DNA-binding ferritin-like
protein - Lactococcus lactis subsp. cremoris (strain
SK11)
Length = 148
Score = 34.7 bits (76), Expect = 3.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 377 TVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLD 493
T E+LN+ V S + Q HW +RG F+ +H +D
Sbjct: 6 TQEVLNQTVADLSKASALVHQIHWYLRGPGFLYLHPKMD 44
>UniRef50_A0U589 Cluster: Beta-lactamase; n=8; Burkholderiaceae|Rep:
Beta-lactamase - Burkholderia cenocepacia MC0-3
Length = 456
Score = 34.7 bits (76), Expect = 3.5
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 522 GYHGRTCSAAGRCSSGDHSSYQQQNPA-EKLPAGHPQRSGSPERTG*PLRNRGGARYPNS 698
G +G+ C+ A R S S+ + PA + HP P R PLR R +R+P++
Sbjct: 118 GSYGQ-CNTAARPSPAPPSTMTGRQPAIRRYTVSHPDGRDRPHRCRPPLRLRTASRFPSA 176
Query: 699 P 701
P
Sbjct: 177 P 177
>UniRef50_Q8J1F4 Cluster: Yib1; n=1; Eremothecium gossypii|Rep: Yib1
- Ashbya gossypii (Yeast) (Eremothecium gossypii)
Length = 324
Score = 34.7 bits (76), Expect = 3.5
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -3
Query: 956 LVKKRADLPKFNREFXQNFYPYKLPXAHXRG 864
+ KKR +LP FNR F N+YPY+ AH G
Sbjct: 155 VAKKRTNLPGFNRPF--NYYPYQQFHAHGNG 183
>UniRef50_Q9A4G1 Cluster: Dps family protein; n=3;
Alphaproteobacteria|Rep: Dps family protein -
Caulobacter crescentus (Caulobacter vibrioides)
Length = 178
Score = 34.3 bits (75), Expect = 4.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 389 LNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDG 496
LN+ + L L T HWN+RG NF ++H +L+G
Sbjct: 40 LNKVLADSYALYLKTHGYHWNVRGPNFQSLHVLLEG 75
>UniRef50_Q50378 Cluster: Ferric exochelin biosynthesis; n=3;
Mycobacterium smegmatis|Rep: Ferric exochelin
biosynthesis - Mycobacterium smegmatis
Length = 360
Score = 33.9 bits (74), Expect = 6.2
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Frame = +1
Query: 490 GWLPHRMIDHLDT---MAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELAD 660
G H M D LDT + +R+V++ + GT+ V ++ LD+ + D L++ D
Sbjct: 148 GLTAHFMDDELDTGDILLQRSVEITPTSTGTSLVYDT--------LDL--IPDVLEDALD 197
Query: 661 RYAIEGGPGTPIRPIVSRITFTGRRLQRR---DWXKPA 765
AIE G TP+ +S+ TF +R R DW PA
Sbjct: 198 --AIENGTATPVPQDLSQRTFFHKRSDRDSLVDWSWPA 233
>UniRef50_Q9RS64 Cluster: DNA protection during starvation protein
1; n=2; Deinococcus|Rep: DNA protection during
starvation protein 1 - Deinococcus radiodurans
Length = 207
Score = 33.9 bits (74), Expect = 6.2
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 329 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGF 499
N L + + + E + E L R + I L L K+ HW++RG F +H D F
Sbjct: 45 NALVNHHYLEEKEFQTVAETLQRNLATTISLYLKFKKYHWDIRGRFFRDLHLAYDEF 101
>UniRef50_Q8RPQ1 Cluster: DNA protection during starvation protein
1; n=34; Firmicutes|Rep: DNA protection during
starvation protein 1 - Bacillus anthracis
Length = 147
Score = 33.9 bits (74), Expect = 6.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 362 SEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGF 499
S K VE+LN+QV + L + HW + G +F +HE + F
Sbjct: 2 STKTNVVEVLNKQVANWNVLYVKLHNYHWYVTGPHFFTLHEKFEEF 47
>UniRef50_Q9A7L7 Cluster: Sensor protein; n=1; Caulobacter
vibrioides|Rep: Sensor protein - Caulobacter crescentus
(Caulobacter vibrioides)
Length = 560
Score = 33.5 bits (73), Expect = 8.2
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = +1
Query: 541 AVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIEGGPGTPIRPIVSRIT 720
A + GV L T ++ P+ + V ++L A ++ EGG +RP+ S
Sbjct: 285 AAEAKGVTLTLTGAERLPRWVRGDPMRLRQVLNNLISNAVKFTTEGGITVDVRPVASGAA 344
Query: 721 FTGRRLQRRDWXKPALTQLNRLAAHSPFRQLG 816
++ RD P LT+ + P+ QLG
Sbjct: 345 AV--EIEVRD-TGPGLTEAQIIRLFDPYEQLG 373
>UniRef50_Q74KF5 Cluster: Non-heme iron-containing ferritin; n=2;
Lactobacillus|Rep: Non-heme iron-containing ferritin -
Lactobacillus johnsonii
Length = 155
Score = 33.5 bits (73), Expect = 8.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 377 TVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDG 496
T +++N V ++ Q HW M G F+ +H LDG
Sbjct: 6 TKKIMNEIVADLTQTHMVVHQHHWYMLGRGFLKLHPYLDG 45
>UniRef50_Q4A6A8 Cluster: Putative neutrophil activating protein
NapA; n=1; Mycoplasma synoviae 53|Rep: Putative
neutrophil activating protein NapA - Mycoplasma synoviae
(strain 53)
Length = 139
Score = 33.5 bits (73), Expect = 8.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 410 FIDLSLITKQAHWNMRGANFIAVHEMLDGF 499
F+ L+L K HWN+ G +F HE LD F
Sbjct: 14 FMLLTLKAKNYHWNVSGEHFFETHEELDTF 43
>UniRef50_Q32TH2 Cluster: Tripartite hemolysin BL component L1;
n=31; Bacteria|Rep: Tripartite hemolysin BL component L1
- Bacillus cereus
Length = 409
Score = 33.5 bits (73), Expect = 8.2
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 353 VSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFR 502
+S + KAT+ L + V Q I LSL Q WN GAN+ +H+ +D +
Sbjct: 321 ISLTNAKATLTDLYQTVDQAI-LSLTNIQQQWNKMGANYTDLHDNIDSMQ 369
>UniRef50_Q27276 Cluster: MEC-5 precursor; n=2; Caenorhabditis|Rep:
MEC-5 precursor - Caenorhabditis elegans
Length = 327
Score = 33.5 bits (73), Expect = 8.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 562 ALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIEGGPGTP 693
AL T VI +T + + DI + DH+K L R + G PG P
Sbjct: 17 ALDTAAVIAIQTEINKHSADIEMILDHVKNLNARVSDLGRPGPP 60
>UniRef50_P0A3A7 Cluster: Uncharacterized low temperature-induced
protein all0458; n=8; Cyanobacteria|Rep: Uncharacterized
low temperature-induced protein all0458 - Anabaena sp.
(strain PCC 7120)
Length = 179
Score = 33.5 bits (73), Expect = 8.2
Identities = 12/45 (26%), Positives = 28/45 (62%)
Frame = +2
Query: 353 VSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEM 487
++D +++ + LLN+ + L + TK+ HW++ G F ++H++
Sbjct: 8 LTDEQRQGVINLLNQDLADSYLLLVKTKKYHWDVVGPQFRSLHQL 52
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,002,081,815
Number of Sequences: 1657284
Number of extensions: 21260511
Number of successful extensions: 56465
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 53366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56433
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88998789286
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -