Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0142.Seq
         (961 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.7  
U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.           23   4.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   4.7  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   6.2  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   8.1  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 586 NSKTPLKSYPLDIHNVQDHLKELAD--RYAIEGGPGTPIRPIVS 711
           N   P +  PL   N++ HL  ++      ++ G  +P  P +S
Sbjct: 30  NENPPPEDTPLSFKNIESHLNAISQITNSTLDPGRKSPSSPRIS 73


>U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.
          Length = 45

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 433 GNQRKINKLDNLAIQQLY 380
           GN RK++K + L + Q Y
Sbjct: 28  GNDRKLSKFETLQMAQTY 45


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 795 FPFSPAGGNSEEGPHRLAFPNSCAP 869
           +PF P   NS  G H  ++  +C P
Sbjct: 74  YPFRPMHQNSYTGYHLGSYAANCPP 98


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 789 STFPFSPAGGNSEEGPHRL 845
           S+  +SPAG    + PHR+
Sbjct: 83  SSVGWSPAGHEEAQSPHRI 101


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 679 PPRLRNGQPVLSGDPE 632
           P  +R+G+P LSG P+
Sbjct: 122 PVLVRDGKPCLSGGPK 137


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,788
Number of Sequences: 336
Number of extensions: 5274
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27099446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)