Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0142.Seq
         (961 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    29   0.74 
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    27   5.2  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   6.9  

>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 827 FAITPSWRKGECAARRLSWVNAGFXQ 750
           +AIT  WR G+ +  R++W +  F Q
Sbjct: 50  WAITSEWRAGDASLMRVAWAHPSFGQ 75


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +2

Query: 269 ITSRGYEIMSTAKLVKSKATNLLYTRNDVSDSEKKATVELL--NRQVIQFIDLSLITKQA 442
           I S    +    KL + +A +L+Y    +S  E K  VELL   RQV  ++    +T   
Sbjct: 368 IVSEAVMMALAPKLGRDEAHDLVYRLCHLSIQENKPLVELLLAERQVTNYLSKEEVTSLL 427

Query: 443 H-WNMRGANFIAVHEML 490
           +  N  G+ F  +   L
Sbjct: 428 NPENYLGSTFEMIERAL 444


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 320 KATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAH 445
           K T+ +Y    V+  E+K  +E L++  +Q  DLS I   AH
Sbjct: 198 KTTSCIYEHLGVTVEEQKM-IENLHKHSVQIDDLSKILVSAH 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,076,539
Number of Sequences: 5004
Number of extensions: 85847
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)