Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0142.Seq
(961 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 31 1.8
09_01_0084 + 1202545-1202755,1202797-1203488 30 2.4
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 30 2.4
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411... 30 2.4
05_04_0166 + 18664609-18664890 30 3.1
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 29 5.5
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 7.3
09_02_0406 - 8629287-8629304,8629384-8629865,8629977-8630291,863... 28 9.6
07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470 28 9.6
06_03_1126 + 27805982-27806475,27806617-27807202 28 9.6
06_03_0324 - 19591267-19592097,19592266-19592583,19592827-19593108 28 9.6
03_01_0220 + 1745719-1745806,1745893-1746062,1746170-1746359,174... 28 9.6
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 28 9.6
>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 30.7 bits (66), Expect = 1.8
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = -1
Query: 577 EWSPELHRPAALHVLPWYPDDRSCGA-EAIQHF--MYGNEVSAAHVPVRLFGNQRKINKL 407
EW P ++ LH+L D +S ++H +YGN + + + NQ+ N
Sbjct: 940 EWRPLMY---LLHILRSISDQKSSSLFSTLEHSSEVYGNSLCSVTRTIEEMSNQQPTNLP 996
Query: 406 DNLAIQQLYCCFFLAVGDIVAGIKQI 329
D++A LY D+++ ++
Sbjct: 997 DDVATSFLYSVICAPPDDVISSFPKL 1022
>09_01_0084 + 1202545-1202755,1202797-1203488
Length = 300
Score = 30.3 bits (65), Expect = 2.4
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +1
Query: 778 NRLAAHSPFRQLGVIAKKARTDWPSPTVAPLXWANGNL 891
+RLA P R V ARTD P VA L W G+L
Sbjct: 111 SRLATGPPVRPRDVPCLLARTDDPPLAVAALSWLGGDL 148
>03_02_0726 + 10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 30.3 bits (65), Expect = 2.4
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 586 NSKTPLKSYPLDIHNVQDHLKELADRYAIEG-GPGTPIRPIVSRITFTGRRLQRRDW 753
N +T + + LD ++++ + I+G GPGT I P + +G R QR+D+
Sbjct: 1099 NGRTAIMNSNLDANSMKHGANMFNEPNRIKGNGPGTLITPEPTCFILSGHRQQRKDY 1155
>01_06_1342 -
36438869-36439459,36439567-36439627,36440751-36441130,
36441955-36442761
Length = 612
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 505 RMIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLD--IHNVQDHLKELADRYAIEG 678
R + + + E +GG A + I+ + L + P+D H+V DH ADR A +
Sbjct: 189 RFLGPAEKLFEEICDVGGAASHVDRTISDEGLLDADPMDGVDHDVVDHDLGGADRAAADA 248
Query: 679 GP 684
GP
Sbjct: 249 GP 250
>05_04_0166 + 18664609-18664890
Length = 93
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -3
Query: 869 RGATVGEGQSVRAFFAITPSWRKGECAARRLSWVNAGFXQSRRCKR 732
+G V EG R SWR+GE A W + Q RRC +
Sbjct: 13 KGEVVREGAVARRRRP-AQSWRRGEAAVEERQWRCSAAHQRRRCDK 57
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 29.1 bits (62), Expect = 5.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 541 HVLPWYPDDRSCGAEAIQHF--MYGNEVSAAHVPVRLFGNQRKINKL 407
H L + DD+ +++F MYG + H+P GNQ+K N L
Sbjct: 385 HELIFPIDDQMNMKSVVEYFKEMYGFTIQHPHLPCLQVGNQKKANYL 431
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 28.7 bits (61), Expect = 7.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 594 NPAEKLPAGHPQRSGSPERTG*PL--RNRGGARYPNSPYSES 713
+P P+ +P+R S R+ PL R RGG R P+ +S S
Sbjct: 462 SPRASSPSRYPRRDRSRSRSRSPLRYRERGGYRRPSPRHSRS 503
>09_02_0406 -
8629287-8629304,8629384-8629865,8629977-8630291,
8630381-8630576
Length = 336
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 673 EGGPGTPIRPIVSRITFTGRRL 738
EG GTP ++ R TF GRR+
Sbjct: 198 EGSDGTPTSSVLRRATFRGRRM 219
>07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470
Length = 445
Score = 28.3 bits (60), Expect = 9.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 824 AITPSWRKGECAARRLSWVNAGFXQSRRCKRRPVNVIRLTIGRI-GVPGP 678
A+ WR+G AA LSW F R + + +++ ++ GV P
Sbjct: 177 AVAGVWREGRVAAEELSWDQTPFRADERARVKACGARVMSVEQVEGVRDP 226
>06_03_1126 + 27805982-27806475,27806617-27807202
Length = 359
Score = 28.3 bits (60), Expect = 9.6
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Frame = +3
Query: 486 CWMASAPHDRSSGYHGRTCSAAGRCSSGDHSSYQQQNPAEKLPAGHPQRSGSPERTG*P- 662
C A+ P R Y GRT + ++ H++ QQ + G + +PE T
Sbjct: 194 CSTAAYPASRCYYYAGRTAATNHSSAASSHAAAQQHRHHHRGGGGFCCFTSNPETTSNGH 253
Query: 663 --LRNRGGARYPNSP 701
R R G R SP
Sbjct: 254 SFRRTRAGGRRARSP 268
>06_03_0324 - 19591267-19592097,19592266-19592583,19592827-19593108
Length = 476
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 673 EGGPGTPIRPIVSRITFTGRRL 738
EG GTP P++ R T GRR+
Sbjct: 342 EGSDGTPTSPVLRRATSRGRRM 363
>03_01_0220 +
1745719-1745806,1745893-1746062,1746170-1746359,
1748486-1748877,1749218-1749523
Length = 381
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 624 PQRSGSPERTG*PLRNRGGAR 686
P R GSP+ G P R RGG R
Sbjct: 356 PARCGSPQYAGTPSRRRGGRR 376
>02_05_0481 +
29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.3 bits (60), Expect = 9.6
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 696 SPYSESYYIHWASFTTS*LGKTCVNPT*SPCSTFPFSPA 812
SPY+ S Y+ WA +T + T V P + +T+ FSP+
Sbjct: 763 SPYATSMYLGWALSSTIAVLATGVIPIVAWFATYRFSPS 801
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,174,459
Number of Sequences: 37544
Number of extensions: 594061
Number of successful extensions: 1530
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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