Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0142.Seq
         (961 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK093453-1|BAC04171.1|  339|Homo sapiens protein ( Homo sapiens ...    31   4.7  
U22961-2|AAA64921.1|  331|Homo sapiens protein (  ).).                 31   6.2  

>AK093453-1|BAC04171.1|  339|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36134 fis, clone TESTI2024648, weakly similar to
           Homo sapiens germline specific RNA binding protein
           (DAZL1) mRNA. ).
          Length = 339

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 531 HGIQMIDHAVRKPSSISCTAMKLAPRMFQCACLVIK 424
           HG+Q   H V  PS+I+  A  + P   +C   +IK
Sbjct: 276 HGVQATYHQVYAPSAITMPAPVMQPEPIKCGAFIIK 311


>U22961-2|AAA64921.1|  331|Homo sapiens protein (  ).).
          Length = 331

 Score = 31.1 bits (67), Expect = 6.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 687 YPNSPYSESYYIHWASFTTS*LGKTCVNPT*SPCST-FPFSPAGGNSEEGPHRL 845
           Y  S  S++  I  A +++S  G  C  P  +PC T  P +P GG  ++   RL
Sbjct: 70  YRRSCRSKARAIQAADYSSSDRGPPCSCPILAPCGTPHPLAPGGGQGDKEMPRL 123


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,013,288
Number of Sequences: 237096
Number of extensions: 3251141
Number of successful extensions: 8486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8486
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12714176638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)