Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0142.Seq
         (961 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68113-2|CAA92149.2|  327|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U33919-1|AAA96505.1|  327|Caenorhabditis elegans MEC-5 precursor...    33   0.23 
U33918-1|AAA96504.1|  327|Caenorhabditis elegans MEC-5 protein.        33   0.23 
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p...    30   2.1  
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p...    30   2.1  
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p...    30   2.1  
Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    29   6.5  
Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical ...    28   8.6  
AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine re...    28   8.6  

>Z68113-2|CAA92149.2|  327|Caenorhabditis elegans Hypothetical
           protein E03G2.3 protein.
          Length = 327

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 562 ALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIEGGPGTP 693
           AL T  VI  +T +  +  DI  + DH+K L  R +  G PG P
Sbjct: 17  ALDTAAVIAIQTEINKHSADIEMILDHVKNLNARVSDLGRPGPP 60


>U33919-1|AAA96505.1|  327|Caenorhabditis elegans MEC-5 precursor
           protein.
          Length = 327

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 562 ALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIEGGPGTP 693
           AL T  VI  +T +  +  DI  + DH+K L  R +  G PG P
Sbjct: 17  ALDTAAVIAIQTEINKHSADIEMILDHVKNLNARVSDLGRPGPP 60


>U33918-1|AAA96504.1|  327|Caenorhabditis elegans MEC-5 protein.
          Length = 327

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 562 ALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIEGGPGTP 693
           AL T  VI  +T +  +  DI  + DH+K L  R +  G PG P
Sbjct: 17  ALDTAAVIAIQTEINKHSADIEMILDHVKNLNARVSDLGRPGPP 60


>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
            F07A11.6e protein.
          Length = 2101

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 459  ALTSLPYMKCWMASAPHDRSSGYHGRTCSAAGRCSSGDHSSYQ---QQNPAEKLPAGHPQ 629
            A  S P  K   +S  HD SSG    + S+ G  SS D S  +   Q  P   +P     
Sbjct: 1253 AFNSTPPKKKNSSSGQHDSSSGSSSDSSSSDGSTSSDDSSDDEVPKQTEPVTSIPV-VAS 1311

Query: 630  RSGSPE 647
             +GSPE
Sbjct: 1312 DNGSPE 1317


>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
            F07A11.6c protein.
          Length = 2392

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 459  ALTSLPYMKCWMASAPHDRSSGYHGRTCSAAGRCSSGDHSSYQ---QQNPAEKLPAGHPQ 629
            A  S P  K   +S  HD SSG    + S+ G  SS D S  +   Q  P   +P     
Sbjct: 1544 AFNSTPPKKKNSSSGQHDSSSGSSSDSSSSDGSTSSDDSSDDEVPKQTEPVTSIPV-VAS 1602

Query: 630  RSGSPE 647
             +GSPE
Sbjct: 1603 DNGSPE 1608


>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
            F07A11.6b protein.
          Length = 2407

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 459  ALTSLPYMKCWMASAPHDRSSGYHGRTCSAAGRCSSGDHSSYQ---QQNPAEKLPAGHPQ 629
            A  S P  K   +S  HD SSG    + S+ G  SS D S  +   Q  P   +P     
Sbjct: 1559 AFNSTPPKKKNSSSGQHDSSSGSSSDSSSSDGSTSSDDSSDDEVPKQTEPVTSIPV-VAS 1617

Query: 630  RSGSPE 647
             +GSPE
Sbjct: 1618 DNGSPE 1623


>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
            protein F07A11.6e protein.
          Length = 2101

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 459  ALTSLPYMKCWMASAPHDRSSGYHGRTCSAAGRCSSGDHSSYQ---QQNPAEKLPAGHPQ 629
            A  S P  K   +S  HD SSG    + S+ G  SS D S  +   Q  P   +P     
Sbjct: 1253 AFNSTPPKKKNSSSGQHDSSSGSSSDSSSSDGSTSSDDSSDDEVPKQTEPVTSIPV-VAS 1311

Query: 630  RSGSPE 647
             +GSPE
Sbjct: 1312 DNGSPE 1317


>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
            protein F07A11.6c protein.
          Length = 2392

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 459  ALTSLPYMKCWMASAPHDRSSGYHGRTCSAAGRCSSGDHSSYQ---QQNPAEKLPAGHPQ 629
            A  S P  K   +S  HD SSG    + S+ G  SS D S  +   Q  P   +P     
Sbjct: 1544 AFNSTPPKKKNSSSGQHDSSSGSSSDSSSSDGSTSSDDSSDDEVPKQTEPVTSIPV-VAS 1602

Query: 630  RSGSPE 647
             +GSPE
Sbjct: 1603 DNGSPE 1608


>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
            protein F07A11.6b protein.
          Length = 2407

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 459  ALTSLPYMKCWMASAPHDRSSGYHGRTCSAAGRCSSGDHSSYQ---QQNPAEKLPAGHPQ 629
            A  S P  K   +S  HD SSG    + S+ G  SS D S  +   Q  P   +P     
Sbjct: 1559 AFNSTPPKKKNSSSGQHDSSSGSSSDSSSSDGSTSSDDSSDDEVPKQTEPVTSIPV-VAS 1617

Query: 630  RSGSPE 647
             +GSPE
Sbjct: 1618 DNGSPE 1623


>Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical
           protein T14G10.5b protein.
          Length = 883

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -3

Query: 869 RGATVGEGQSVRAFFAITPSWRKGECAARRLSWV 768
           +G ++G  ++  AFF +T  W+  + + RR+ ++
Sbjct: 66  QGESIGRTEATEAFFGVTKLWQSKDVSLRRMVYL 99


>Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical
           protein T14G10.5a protein.
          Length = 870

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -3

Query: 869 RGATVGEGQSVRAFFAITPSWRKGECAARRLSWV 768
           +G ++G  ++  AFF +T  W+  + + RR+ ++
Sbjct: 53  QGESIGRTEATEAFFGVTKLWQSKDVSLRRMVYL 86


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +3

Query: 528 HGRTCSAAGRCSSGDHSSYQQQNPAEKLPAGHPQRSGSPERTG*PLRNRGGAR 686
           H R   +  R  SG HS  + ++P  K P    +RS S  R+  P RN   AR
Sbjct: 331 HSRRSESTSRRRSGRHSRSRSRSPPRKRPV---RRSRSRSRSRTPNRNWTRAR 380


>Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical
           protein C49C3.11 protein.
          Length = 404

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 468 SLPYMKCWMASAPHDRSSGYHGRTC 542
           +L + K W A APHD + G H   C
Sbjct: 307 NLMWKKRWTAGAPHDNTVGDHHEYC 331


>AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical
           protein Y102A5D.1 protein.
          Length = 416

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 538 RAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADR-YAIEGGPGTPIRPIVSR 714
           + V+ G +AL     I++   L +   DIH +Q +LKEL ++   +    G P++  V R
Sbjct: 191 KVVRNGKLALSVQATISNAERLYT-DADIHKLQQYLKELVNKALKLRFTEGKPVKSEVVR 249

Query: 715 I 717
           +
Sbjct: 250 V 250


>AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein40 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 262 VIKRLSIAPAMCSAILAVPITLIVVTS--VKNKTNKDSMS 149
           VIKR  IA A+C++I  + +T  +V S  + NK N  S++
Sbjct: 192 VIKRTWIAVAICTSISVLTVTQFIVLSRMIINKLNSMSIT 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,875,896
Number of Sequences: 27780
Number of extensions: 505951
Number of successful extensions: 1588
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)