Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0142.Seq
         (961 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 559 VALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRY 666
           V L    +IN+K  LK +P D H + D L  L   Y
Sbjct: 870 VPLEGNLMINNKYALKFFPFDKH-ILDKLPTLISNY 904


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 612  PAGHPQRSGSPERTG*PLRNRGGARYPNSP 701
            P GHP  + +  R+G     R   RY   P
Sbjct: 1762 PVGHPTNASAHSRSGSQSMPRQNGRYSRVP 1791


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 317 SKATNLLYTRNDVSDSEKKATVE 385
           +K T + Y  ND+S +E+K T+E
Sbjct: 424 AKNTIIDYRNNDLSINEEKRTIE 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 284,054
Number of Sequences: 438
Number of extensions: 6444
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)