Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0142.Seq
         (961 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i...    31   1.1  
At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille prot...    29   3.5  
At5g60600.2 68418.m07603 1-hydroxy-2-methyl-2-(E)-butenyl 4-diph...    29   6.1  
At5g60600.1 68418.m07602 1-hydroxy-2-methyl-2-(E)-butenyl 4-diph...    29   6.1  
At3g24610.1 68416.m03091 kelch repeat-containing F-box family pr...    29   6.1  
At2g43980.1 68415.m05469 inositol 1,3,4-trisphosphate 5/6-kinase...    29   6.1  
At2g33810.1 68415.m04148 squamosa promoter-binding protein-like ...    28   8.0  

>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
           identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH4 (SUVH4) GI:13517748
          Length = 624

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 633 NVVDVQRVTFQRGFAVDNLSGPQSYTAQLHCTFC 532
           N+  +Q +T+  G+A+D++ GP     QL C +C
Sbjct: 582 NISPMQELTYDYGYALDSVHGPDGKVKQLAC-YC 614


>At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille protein
           (ZWILLE) identical to SP|Q9XGW1 PINHEAD protein (ZWILLE
           protein) {Arabidopsis thaliana}; contains Pfam profiles
           PF02171: Piwi domain, PF02170: PAZ domain
          Length = 988

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -1

Query: 526 YPDDRSCGAEA-IQHF--MYGNEVSAAHVPVRLFGNQRKINKL 407
           +P D +C  ++ I++F  MYG  +   H+P    GNQ+K + L
Sbjct: 400 FPVDENCTMKSVIEYFQEMYGFTIQHTHLPCLQVGNQKKASYL 442


>At5g60600.2 68418.m07603 1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase, putative / GcpE family protein
           similar to GcpE [Plasmodium falciparum] GI:13094969;
           contains Pfam profile PF04551: GcpE protein; supporting
           cDNA gi|27462471|gb|AF434673.1
          Length = 740

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 538 RAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYA 669
           R V +G VALG+   I  +T   S   DI    D +  +AD+ A
Sbjct: 88  RTVMVGNVALGSEHPIRIQTMTTSDTKDITGTVDEVMRIADKGA 131


>At5g60600.1 68418.m07602 1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase, putative / GcpE family protein
           similar to GcpE [Plasmodium falciparum] GI:13094969;
           contains Pfam profile PF04551: GcpE protein; supporting
           cDNA gi|27462471|gb|AF434673.1
          Length = 741

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 538 RAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYA 669
           R V +G VALG+   I  +T   S   DI    D +  +AD+ A
Sbjct: 88  RTVMVGNVALGSEHPIRIQTMTTSDTKDITGTVDEVMRIADKGA 131


>At3g24610.1 68416.m03091 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 445

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 525 IQMIDHAVRKPSSISCTAMKLAPRMFQCACLV-IKERSINW 406
           +  +DHA     S SC +M L+P ++Q   L+   E+ + W
Sbjct: 147 VSRLDHAALSLVSKSCRSMVLSPELYQTRSLIGYAEKFLYW 187


>At2g43980.1 68415.m05469 inositol 1,3,4-trisphosphate 5/6-kinase
           family protein contains Pfam profile PF05770: Inositol
           1, 3, 4-trisphosphate 5/6-kinase;  contains Prosite
           PS00591: Glycosyl hydrolases family 10 active site;
           similar to inositol 1,3,4-trisphosphate 5/6-kinase
           (GI:1322038) [Homo sapiens]
          Length = 488

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 290 IMSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHW 448
           I S++ L KS   N L  +  + DS K   V+  N+  +  IDL L+T+ A W
Sbjct: 376 IPSSSSLRKSAEENGL--KPILFDSLKSLPVDSANQNPVSEIDLELVTEAATW 426


>At2g33810.1 68415.m04148 squamosa promoter-binding protein-like 3
           (SPL3) identical to squamosa-promoter binding protein
           like 3 [Arabidopsis thaliana] GI:2462081; contains Pfam
           profile PF03110: SBP domain
          Length = 131

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 495 ASAPHDRSSGYHGRTCSAAGRCSSGDHSSYQQQNPAEKLPAGHPQR 632
           A APH R SG H R C    R  +       +++   +L AGH +R
Sbjct: 80  AKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRSCRRRL-AGHNER 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,468,364
Number of Sequences: 28952
Number of extensions: 458185
Number of successful extensions: 1148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2314656624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)