Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0140.Seq
         (505 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.042
UniRef50_UPI00004999F5 Cluster: alpha-amylase; n=1; Entamoeba hi...    34   2.1  
UniRef50_UPI0000586A2F Cluster: PREDICTED: hypothetical protein,...    33   4.8  
UniRef50_Q48CQ9 Cluster: ACT domain protein; n=2; Pseudomonas sy...    32   6.4  
UniRef50_Q3CZJ9 Cluster: Glycosyl transferase, group 2 family pr...    32   6.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.5 bits (88), Expect = 0.042
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -1

Query: 475 R*VDELTAHLVLSGYWSP 422
           R VDELTAHLVLSGYWSP
Sbjct: 158 RWVDELTAHLVLSGYWSP 175


>UniRef50_UPI00004999F5 Cluster: alpha-amylase; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: alpha-amylase - Entamoeba
           histolytica HM-1:IMSS
          Length = 489

 Score = 33.9 bits (74), Expect = 2.1
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -2

Query: 378 VLRSQYSYNGCPTHQTETHYCFTAEIGRKVVPTRAXSSEVLHQY-LRKL*FCGFDFYYTM 202
           V  ++ + NG  T  TE      AE  +KV P     +EV  ++ + KL  CGFD+YY  
Sbjct: 226 VWENELTANGYSTPSTEFWTEAIAE-AKKVNPNVIFMAEVYEEWQMTKLQECGFDYYYDK 284

Query: 201 LFLHR 187
            FL +
Sbjct: 285 PFLDK 289


>UniRef50_UPI0000586A2F Cluster: PREDICTED: hypothetical protein,
           partial; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: hypothetical protein, partial -
           Strongylocentrotus purpuratus
          Length = 491

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 122 DSNTGAYRSTRMHRTSYPLGHNDFSYPL 39
           D+NT   RS+ M+  SYP G N FS P+
Sbjct: 384 DANTQTDRSSTMYNYSYPKGSNSFSAPM 411


>UniRef50_Q48CQ9 Cluster: ACT domain protein; n=2; Pseudomonas
           syringae group|Rep: ACT domain protein - Pseudomonas
           syringae pv. phaseolicola (strain 1448A / Race 6)
          Length = 254

 Score = 32.3 bits (70), Expect = 6.4
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -3

Query: 128 LRDSNTGAYRSTRMHRTSYPLGHNDFSYPLGHDDFCCV 15
           +RDS  G Y S R  +TS  +  ND+ +  GHDD  CV
Sbjct: 1   MRDS--GYYMSRRCVKTSLNMSLNDWIFISGHDDIHCV 36


>UniRef50_Q3CZJ9 Cluster: Glycosyl transferase, group 2 family
           protein; n=13; Streptococcus|Rep: Glycosyl transferase,
           group 2 family protein - Streptococcus agalactiae H36B
          Length = 470

 Score = 32.3 bits (70), Expect = 6.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 293 RWYLPVRTHQRSYTSIYANYNFAGLIFITQCYSFIVEV 180
           RWYL +    + Y SI+ANY F  +  I+  Y  + E+
Sbjct: 318 RWYLGLYQCLKKYKSIFANYRFGAVGSISYIYYILFEL 355


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,670,626
Number of Sequences: 1657284
Number of extensions: 10498659
Number of successful extensions: 19820
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19817
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)