Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0140.Seq
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    25   6.5  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   6.5  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.5  

>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 101 RSTRMHRTSYPLGHNDFSYPLGH 33
           R TR H  +  LG+ND ++P  H
Sbjct: 5   RLTRQHLLANTLGNNDENHPSNH 27


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 344 PPIKPKRITASRLK*AGRWYLPVRTHQRSYTSIYANYNFAGLIFITQCY 198
           PP  P+ +T + +      +   +    SY+ IY  Y F   IF  +C+
Sbjct: 392 PPEAPRNLTNASVDSYLNSFEMYQRRWSSYSIIYTQYAFQWQIFKNKCF 440


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 461 AHSPPGVKWLLEPIDIYNVNAPPTLR 384
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,483
Number of Sequences: 5004
Number of extensions: 43177
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)