Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0140.Seq
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738     29   2.8  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    28   4.9  

>04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738
          Length = 707

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -3

Query: 200 YSFIVEVNREHLL----STYFIRKIGTRLRDSNTGAYRSTRMHRTSYPLGHND 54
           Y F+     + LL    ST F   +GTRLR +   A     +H  S+P+ H D
Sbjct: 470 YEFVQNKTLKELLDLQRSTRFHVTLGTRLRIAAESAGAFAHLHSLSHPILHGD 522


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 325 RFGLMGGAAVVTILRP*NLYLKVGGAFTL*MSMGSSNHLTPG 450
           + G++G   V+   R   + L +GG     ++MG + HL  G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,094,867
Number of Sequences: 37544
Number of extensions: 303163
Number of successful extensions: 547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)