Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0140.Seq
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai...    27   7.2  
At5g14570.2 68418.m01709 transporter, putative similar to trans-...    27   9.5  
At5g14570.1 68418.m01708 transporter, putative similar to trans-...    27   9.5  
At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing...    27   9.5  
At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p...    27   9.5  

>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
           Pfam domains PF00628: PHD-finger and PF00855: PWWP
           domain; identical to cDNA trithorax 3 (ATX3) partial cds
           GI:15217142
          Length = 799

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 149 IRKIGTRLRDSNTGAYRSTRMHRTSYPLGHNDFSYPLG 36
           +R + +R +DS  G ++S+R    S    H+D    LG
Sbjct: 83  VRAVPSRFKDSIVGTWKSSRRKGESTESSHDDDDVSLG 120


>At5g14570.2 68418.m01709 transporter, putative similar to
           trans-membrane nitrate transporter protein AtNRT2:1
           [Arabidopsis thaliana] GI:3747058, high-affinity nitrate
           transporter ACH1 [Arabidopsis thaliana] GI:3608362;
           contains Pfam profile PF00083: Sugar (and other)
           transporter
          Length = 397

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -3

Query: 239 NYNFAGLIFITQCYSFIVEVNREHLLSTYFIRKIGTRLRDSNTGAYRSTRMHRTSYPLG 63
           NY  A ++ +   YS+ VE+  +++++ YF  + G  L  + T A      +  S P G
Sbjct: 267 NYR-AWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAASFGISNIASRPAG 324


>At5g14570.1 68418.m01708 transporter, putative similar to
           trans-membrane nitrate transporter protein AtNRT2:1
           [Arabidopsis thaliana] GI:3747058, high-affinity nitrate
           transporter ACH1 [Arabidopsis thaliana] GI:3608362;
           contains Pfam profile PF00083: Sugar (and other)
           transporter
          Length = 493

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -3

Query: 239 NYNFAGLIFITQCYSFIVEVNREHLLSTYFIRKIGTRLRDSNTGAYRSTRMHRTSYPLG 63
           NY  A ++ +   YS+ VE+  +++++ YF  + G  L  + T A      +  S P G
Sbjct: 267 NYR-AWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAASFGISNIASRPAG 324


>At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing
           enzyme family protein low similarity to cis,cis-muconate
           lactonizing enzyme [Burkholderia sp. TH2] GI:23491535;
           contains Pfam profile: PF01188 Mandelate
           racemase/muconate lactonizing enzyme, C-terminal domain,
           PF02746: Mandelate racemase/muconate lactonizing enzyme,
           N-terminal domain
          Length = 410

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 331 GLMGGAAVVTILRP*NLYLKVGGAFTL*MSMGSSNHLTPG 450
           G++    V+ + R   + L +GG     ++MG S HL  G
Sbjct: 321 GILESLEVIELARSSGIELMIGGMVETRLAMGFSGHLAAG 360


>At2g17860.1 68415.m02069 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 253

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 195 GITLCNKNQTRKIIICVNTGVGPLM---SXHG*VPPSCL 302
           G TLCN+N+   I  CV    G      S  G +PP+ L
Sbjct: 75  GRTLCNQNEITGIFTCVTGDCGSSQIECSGAGAIPPATL 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,077,881
Number of Sequences: 28952
Number of extensions: 237897
Number of successful extensions: 462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)