Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0137.Seq
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.5  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   4.5  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   6.0  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 283 YXSLIRSRNSCRTMKWII*YF*RXLHSKLRIFYICFMN 170
           + SL+ ++NSC    W+I  F +    K+  F   F N
Sbjct: 314 FISLLSAKNSCSLKMWLIHSFNKGWPVKIEFFVSFFKN 351


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 87  AIEENDTYLIKKKTISNTSFFFAVNRY*FIKQI 185
           A+++ND++  K + I N  +  AVNR   I+ +
Sbjct: 712 AVDDNDSFQAKNRAIYNQIYPEAVNRLKLIETL 744


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 224 ILNNPFHCPTTISTSN 271
           I NNP H PTT  T+N
Sbjct: 262 IHNNPRHAPTTKETAN 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,123
Number of Sequences: 5004
Number of extensions: 12975
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)