Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0131.Seq
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    28   2.2  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    27   5.1  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   8.9  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 213 NSYGLPRDRLKSTTNGSRCITKREVHVFSGR*TFTYRADGERTHE 79
           N +G   D +K  ++   C T+   H+  G  +    +D E THE
Sbjct: 219 NKWGHQFDIVKPDSSSCCCFTRGYTHLVQGAGSILQMSDHENTHE 263


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
 Frame = -2

Query: 616 ASWRKGGCAARRLSWVTPGFSQSRR-CKTTASELXYDHYRANWVPGP-XRVXETVSSQT- 446
           + WR G  +  R++W  P F Q    C        Y+  + N+       V + + +++ 
Sbjct: 54  SEWRAGDASLMRVAWAHPSFGQVLAVCSLDRGVRIYEEQKKNFESKTWVEVAKLMDARSA 113

Query: 445 FKQTRTSPRLHGCDNRRVALASALR 371
                  P  HGC    V+  + LR
Sbjct: 114 VLDISFCPFQHGCKLAAVSADATLR 138


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -3

Query: 93  ERTHETNVPSTSERT*TYAREKTMNLSVR 7
           ER  E+++P+ +++   Y ++KT NLS++
Sbjct: 470 ERIIESDLPNNNKQKDRYFKDKTSNLSMK 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,586,867
Number of Sequences: 5004
Number of extensions: 70543
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)