Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0131.Seq
         (944 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl...    30   2.1  
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl...    30   2.1  
AF040646-4|AAO38629.1|  395|Caenorhabditis elegans Hypothetical ...    30   2.8  
AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical ...    30   2.8  
Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    29   6.4  
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    29   6.4  

>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
            methyltransferase-likeprotein 1, isoform b protein.
          Length = 1590

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 176  RRTGRDALL-REKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR*ISP 12
            RR  +D+   R +    R   RSR+V  +N + ++      N R+R+P R R  SP
Sbjct: 1118 RRPNKDSYRDRRRFNGRRSRSRSRSVSPQNYKRRKLDEHDNNHRQRSPIRDRHTSP 1173


>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
            methyltransferase-likeprotein 1, isoform a protein.
          Length = 1604

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 176  RRTGRDALL-REKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR*ISP 12
            RR  +D+   R +    R   RSR+V  +N + ++      N R+R+P R R  SP
Sbjct: 1132 RRPNKDSYRDRRRFNGRRSRSRSRSVSPQNYKRRKLDEHDNNHRQRSPIRDRHTSP 1187


>AF040646-4|AAO38629.1|  395|Caenorhabditis elegans Hypothetical
           protein H17B01.4b protein.
          Length = 395

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -3

Query: 246 DTRSERVLNE*N---SYGLPRDRLKSTTNGSRCITKREVHVFSGR*TFTYRADGERTHET 76
           D RS RV N+ N   ++ LP    KS       +T + +HV SGR    +R   E+  ET
Sbjct: 101 DGRSVRVWNKNNGVLAHQLPISEQKSEIQAIH-VTNQRLHVASGRTLVVFRLGDEKPVET 159

Query: 75  NVPST 61
            +  T
Sbjct: 160 VISKT 164


>AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical
           protein H17B01.4a protein.
          Length = 946

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -3

Query: 246 DTRSERVLNE*N---SYGLPRDRLKSTTNGSRCITKREVHVFSGR*TFTYRADGERTHET 76
           D RS RV N+ N   ++ LP    KS       +T + +HV SGR    +R   E+  ET
Sbjct: 101 DGRSVRVWNKNNGVLAHQLPISEQKSEIQAIH-VTNQRLHVASGRTLVVFRLGDEKPVET 159

Query: 75  NVPST 61
            +  T
Sbjct: 160 VISKT 164


>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -1

Query: 236 PNVF*TNKTRTVSRAIVLNPRRTG-RDALLREKCTSSRDVKRSRTVPTENERTKRTFRQH 60
           P+   T+KT T  R  V  P  T  R    + KCT  ++V   + +PT    T  +F  H
Sbjct: 293 PDANETSKTPTAIR--VRRPSPTNLRSVSFQNKCTVLKNVPMPQVLPT----TSSSFDHH 346

Query: 59  LNARKRTPER 30
                 TP+R
Sbjct: 347 PQYHSNTPDR 356


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -1

Query: 200 SRAIVLNPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 24
           SR     PR   R ++ R+     R+ +R R    E+ R +R   +    R+R+PER+R
Sbjct: 260 SRKDQRKPREDRRRSVERQ---DQREDRRDRRRSPEDPRERRRSPEDRTVRRRSPERRR 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,935,760
Number of Sequences: 27780
Number of extensions: 404827
Number of successful extensions: 1054
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)