Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0131.Seq
         (944 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I...    29   4.5  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    29   5.9  
At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger) fa...    29   5.9  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    29   5.9  

>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
           GI:9651815 from [Arabidopsis thaliana]; identical to
           cDNA DNA ligase IV, GI:9651814
          Length = 1219

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 836 LVPKLEXHST-LSRSNLLDLIRDFADSAYW 750
           L+PK   H T  SR+ L D I +F+DS YW
Sbjct: 734 LLPKYFLHLTDASRTKLQDDIDEFSDSYYW 763


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 155 LLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 24
           +LREK    RD+++ R    EN+  K   R+H   R R  E+ R
Sbjct: 97  MLREKKRKERDMEKERDRSKEND--KGVEREHEGDRNRAKEKDR 138


>At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 545

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 67  RNVRFVRSFSVGTVRERLTSREDV 138
           RNVRF R+ SVG +R+R+  R  +
Sbjct: 261 RNVRFSRTLSVGRLRDRVLRRSSL 284


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 176 RRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 24
           R+   +A  RE+     + +  R    E E T+R  R+   ARKR  ERKR
Sbjct: 447 RKEEEEARKREEAKRREEEEAKRR---EEEETERKKREEEEARKREEERKR 494


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,734,651
Number of Sequences: 28952
Number of extensions: 372656
Number of successful extensions: 880
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2266029384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)