Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0130.Seq
         (962 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77665-7|CAI46591.1|  360|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical p...    28   8.6  
U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription f...    28   8.6  
U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein ( Caeno...    28   8.6  

>Z77665-7|CAI46591.1|  360|Caenorhabditis elegans Hypothetical
           protein K02E11.10 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/55 (29%), Positives = 20/55 (36%)
 Frame = -3

Query: 858 ISPKRAHLTGXVXGALXXAGCXGLPQRDPLXLPGPYAXXFRFLPFLSRPRSPAFP 694
           +S   A L G + G      C G P   P   P P A  +   P    P  P+ P
Sbjct: 11  VSTSSAFLFGLLGGGGGGGACCGAPAPAPALAPAPAAGGYVTAPSAPAPLFPSAP 65


>Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 79  DERDTSERSRKNARTRLSVLVPNSA 5
           D++DT  RS+ NAR R+ V   NSA
Sbjct: 297 DDKDTDRRSQNNARERVRVRDINSA 321


>Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 79  DERDTSERSRKNARTRLSVLVPNSA 5
           D++DT  RS+ NAR R+ V   NSA
Sbjct: 297 DDKDTDRRSQNNARERVRVRDINSA 321


>U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription
           factor E12/47 homolog protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 79  DERDTSERSRKNARTRLSVLVPNSA 5
           D++DT  RS+ NAR R+ V   NSA
Sbjct: 297 DDKDTDRRSQNNARERVRVRDINSA 321


>U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein (
           Caenorhabditis elegansN2 basic-helix-loop-helix
           transcription factor E12/47homolog mRNA, complete cds.
           ).
          Length = 399

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 79  DERDTSERSRKNARTRLSVLVPNSA 5
           D++DT  RS+ NAR R+ V   NSA
Sbjct: 297 DDKDTDRRSQNNARERVRVRDINSA 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,953,154
Number of Sequences: 27780
Number of extensions: 417985
Number of successful extensions: 737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)