Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0129.Seq
         (522 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.94 
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   6.6  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 18/56 (32%), Positives = 20/56 (35%)
 Frame = -3

Query: 316 YVFSYRHNIVSSLLCTSSTYMCFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPF 149
           Y F Y   I   LLC    Y  F  F   L       YF+   FF +   YF   F
Sbjct: 101 YYFYYAFII---LLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFYCAF 153



 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = -3

Query: 289 VSSLLCTSSTYMCFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKP 152
           V  LLCT   Y  F         +Y ++ F     F +   YF+ P
Sbjct: 94  VHFLLCTYYFYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVP 139


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +3

Query: 87  IFIKRSSIWVEIGLKVSTCLEKGFIKYL 170
           +FI + ++W  +  K+S     G +K +
Sbjct: 115 LFISKDAVWRNLRTKLSPVFTSGKMKLM 142


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 265 KKYRAMKRRYYDDN 306
           K Y +MKR YY  N
Sbjct: 147 KVYNSMKREYYWPN 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,504
Number of Sequences: 336
Number of extensions: 2064
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)