Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0129.Seq
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    29   0.56 
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   1.3  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    26   3.0  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   3.0  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    26   3.0  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   5.2  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    25   6.8  

>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 280 LLCTSSTYMCFNFFNNKLTMFYHYLYFLWISFFTIL--AKYFMKPFSKQVETLRPISTQI 107
           +LC S      N     + MFY  +Y L++SF   +  A Y     +    T  P+STQ+
Sbjct: 536 VLCGSLELQSKNIVAGGVRMFYAIIYSLFLSFGISIGAALYGWMDHNATDSTSCPVSTQM 595

Query: 106 EERF 95
           ++++
Sbjct: 596 DDKW 599


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 166 YFMKPFSKQVETLRPISTQIEERF-IKIQNRFS 71
           YF K FS+ V+ L+P+ +++   + I++ N FS
Sbjct: 117 YFQKDFSQTVDDLKPLLSELGLNYEIELPNSFS 149


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/80 (21%), Positives = 37/80 (46%)
 Frame = -3

Query: 298 HNIVSSLLCTSSTYMCFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPI 119
           + +   LL    +   FN+ N+K  +   Y   L      +L ++  + F++ +E +  +
Sbjct: 108 YRLAPKLLFLLLSQTLFNYANSKDPLHIWYKARLDFLHQQMLKEHVSELFNQIMEGMHIV 167

Query: 118 STQIEERFIKIQNRFSMWLG 59
           S+ +      +Q RF+M +G
Sbjct: 168 SSHVSSLDRDLQGRFTMEMG 187


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 268 SSTYMCFNFFNNKLTMFYHYLYFLWISF-FTILAKYF 161
           S+  MC + F  +  +F  ++Y+L+ SF   IL  +F
Sbjct: 408 SNAKMCLSDFEKRKQIFAEFIYWLYNSFIIPILQSFF 444


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 301 RHNIVSSLLCTSSTYMCFNFFNNKLTMFYH 212
           RHN++S+L C+S  ++        + +F+H
Sbjct: 37  RHNLLSTLFCSSMLHLSKGLTVKDVRIFFH 66


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -3

Query: 172 AKYFMKPFSKQVETLRPISTQIEERFIKIQNRFSMWLGHDVY 47
           AKY+ + F+     +  +   +   ++K++NRF+  L +D+Y
Sbjct: 115 AKYWTR-FTTSARFINHLFGYLNRYWVKLKNRFTETLVYDIY 155


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 265 STYMCFNFFNNKLTMFYHYLYFLWISFFTILAKYFM 158
           ST+    FF+N+   F  + Y  + S F++L  + +
Sbjct: 380 STFTLRQFFHNEFPRFLPHAYPYYASCFSVLGAFLL 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,494
Number of Sequences: 5004
Number of extensions: 32111
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)