Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0129.Seq
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)                   27   7.1  
SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)              27   9.4  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  27   9.4  

>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
          Length = 711

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 65  PHRKAVLNLYKTLLYLGRDWPQGFDLFRKRLHKVFSKNSEETD 193
           PH  A      +L   G++ P+  D   K+LH +FS  SE  D
Sbjct: 13  PHSPAKKKAKFSLRLKGKNKPKSSDDSPKKLHPIFSPVSESPD 55


>SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)
          Length = 568

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 134 NLEANLDPDRGAFYKDSKPLFYVAG 60
           +L  ++D D   F KD KP  Y++G
Sbjct: 17  SLSFSIDYDNNCFMKDGKPFRYISG 41


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 110  LGRDWPQGFDLFRKRLHKVFSKNSEET 190
            LGRD     +LFR++ + VFS ++E T
Sbjct: 1941 LGRDGRSALELFRRKGYSVFSGSTEFT 1967


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,893,937
Number of Sequences: 59808
Number of extensions: 202211
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)