Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0129.Seq
         (522 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC100276-1|AAI00277.1|   88|Homo sapiens LYR motif containing 5 ...    80   5e-15
BC071769-1|AAH71769.1|   88|Homo sapiens LYR motif containing 5 ...    80   5e-15

>BC100276-1|AAI00277.1|   88|Homo sapiens LYR motif containing 5
           protein.
          Length = 88

 Score = 79.8 bits (188), Expect = 5e-15
 Identities = 36/66 (54%), Positives = 48/66 (72%)
 Frame = +2

Query: 56  MAQPHRKAVLNLYKTLLYLGRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKHGEFV 235
           MA   R  VL LYK LLYLGRD+P+G D F+KRL  +F KN +  +P+KI+ ++  GEFV
Sbjct: 1   MANSLRGEVLKLYKNLLYLGRDYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFV 60

Query: 236 VKEIEA 253
           +KE+EA
Sbjct: 61  MKELEA 66



 Score = 31.1 bits (67), Expect = 2.4
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 256 YKLKKYRAMKRRYYDD 303
           Y L+KYRAMK+RYY D
Sbjct: 68  YFLRKYRAMKQRYYSD 83


>BC071769-1|AAH71769.1|   88|Homo sapiens LYR motif containing 5
           protein.
          Length = 88

 Score = 79.8 bits (188), Expect = 5e-15
 Identities = 36/66 (54%), Positives = 48/66 (72%)
 Frame = +2

Query: 56  MAQPHRKAVLNLYKTLLYLGRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKHGEFV 235
           MA   R  VL LYK LLYLGRD+P+G D F+KRL  +F KN +  +P+KI+ ++  GEFV
Sbjct: 1   MANSLRGEVLKLYKNLLYLGRDYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFV 60

Query: 236 VKEIEA 253
           +KE+EA
Sbjct: 61  MKELEA 66



 Score = 31.1 bits (67), Expect = 2.4
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 256 YKLKKYRAMKRRYYDD 303
           Y L+KYRAMK+RYY D
Sbjct: 68  YFLRKYRAMKQRYYSD 83


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,371,301
Number of Sequences: 237096
Number of extensions: 1051777
Number of successful extensions: 6173
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6173
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)