Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0129.Seq
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032618-5|CAE17991.1|   83|Caenorhabditis elegans Hypothetical ...    51   6e-07
U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical pr...    32   0.22 
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    31   0.66 
AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical ...    30   0.87 
AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical ...    30   0.87 
Z78410-1|CAB01638.2|  330|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    27   8.1  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    27   8.1  

>AL032618-5|CAE17991.1|   83|Caenorhabditis elegans Hypothetical
           protein Y42A5A.5 protein.
          Length = 83

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 24/53 (45%), Positives = 34/53 (64%)
 Frame = +2

Query: 110 LGRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEAHIS*R 268
           +G+++P G   F  RL   FSKN E  D ++++ ++  GEFVVKEIEA  S R
Sbjct: 1   MGKEYPGGSKWFHDRLKLAFSKNKEVQDSKQVEQLIARGEFVVKEIEALYSLR 53



 Score = 32.3 bits (70), Expect = 0.22
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 256 YKLKKYRAMKRRYYD 300
           Y L+KYRAMK+RYYD
Sbjct: 50  YSLRKYRAMKQRYYD 64


>U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical
           protein C16A3.5 protein.
          Length = 163

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +2

Query: 47  IYIMAQPHRKAVLNLYKTLLYLGRDWPQGFDL---FRKRLHKV-FSKNSEETDPQKIQIM 214
           ++  A  HR+ V  LYK  L    +W  G +L   F+K + +  F  N++E D +K QI+
Sbjct: 7   MFTKALSHRQKVTRLYKRCLREVDNWYGGNNLEVRFQKCIIRARFDANADEVDTRKSQIL 66

Query: 215 VKHG 226
           +  G
Sbjct: 67  LADG 70


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 290 RLFIALYFFNLYVLQFL*QQTHHVLPLFVFFVDQFLHY 177
           R+ IAL FF L+ + ++  Q  HVL +FV  V++F  Y
Sbjct: 98  RVLIALLFFALFNVLYIITQAFHVL-IFVLAVERFFIY 134


>AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical
           protein F22F7.1b protein.
          Length = 392

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 226 TMFYHYLYFLWISFFTILAKYFMKPFSKQV 137
           + FY YL  LWI F +I  KY   PF++++
Sbjct: 276 SQFYGYLIGLWIMFLSIFVKY---PFTRRI 302


>AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical
           protein F22F7.1a protein.
          Length = 426

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 226 TMFYHYLYFLWISFFTILAKYFMKPFSKQV 137
           + FY YL  LWI F +I  KY   PF++++
Sbjct: 276 SQFYGYLIGLWIMFLSIFVKY---PFTRRI 302


>Z78410-1|CAB01638.2|  330|Caenorhabditis elegans Hypothetical
           protein C51E3.1 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 318 IMCLVIVIISSLHCSVLLQLICASISLTTNSPCFTIICIFC 196
           I C  I +I +L     + +IC S++   +SPC+ +I + C
Sbjct: 17  IFCSTIGVIGNL-----IMIICCSVTKRLHSPCYFLISLTC 52


>U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical
           protein B0244.5 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = -3

Query: 316 YVFSYRHNIVSSLLCTSSTYMCFNFFNNKLTMF-YHYLYFLW--ISFFTILAKYFMKPFS 146
           Y+F     I S  L  SS  M         T F  ++L+FL   +SF+++L  Y      
Sbjct: 82  YIFVVSRGISS--LSASSIMMVLRLLKMLSTSFTVYFLFFLIDDLSFYSLLGSYVGSTLL 139

Query: 145 KQVETLRPI--STQIEERFI 92
             + T+RPI  S QI  R +
Sbjct: 140 LYLATVRPIFYSIQISVRIV 159


>Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical
           protein F53C11.2 protein.
          Length = 693

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -3

Query: 265 STYMCFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPISTQIEE 101
           ST   F F++   T+  +   F W S F +      K F K +   R  STQ  E
Sbjct: 629 STMQMFVFYSIPGTLLSYAFAFFWSSLFEVPVAKIEKIFLKPISVYRGKSTQAIE 683


>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 287 LFIALYFFNLYVLQFL*QQTHHVLPLFVFFVDQFLHY 177
           + IAL FF L+ + ++  Q  HVL +FV  V++F  Y
Sbjct: 100 VLIALLFFALFNVLYIITQAFHVL-IFVLAVERFFLY 135


>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 276 SVLLQLICASISLTTNSPCFTIICI 202
           S++ Q  C S+S   +SPC   IC+
Sbjct: 423 SIISQADCGSVSRMVSSPCGNYICV 447


>U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical
           protein R03H4.6 protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 292 IVSSLLCTSSTYMCFNFFNNKLTMFYHYLYFLWISFFTILAKYFMK-PFSKQVETLRPIS 116
           +++S L T   ++CF F N +    + +L  LW      +A ++ K  F +  E L+P  
Sbjct: 167 LIASSLTTVIGFLCFAFINQQFAFNFMFLR-LWQFSAGFMALFWKKISFYEYSEKLKPAK 225

Query: 115 TQI 107
            ++
Sbjct: 226 IEL 228


>Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical
           protein F22B8.5 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 313 VFSYRHNIVSSLLCTSSTYMCFNFFNN-KLTMFYHYLYFLWISFFT 179
           V++  ++    LL   S Y  +  F+  KL  F    YF+W+ ++T
Sbjct: 101 VYTGLYSSTICLLAIQSIYRYWALFDTPKLEYFNGIYYFIWVGYYT 146


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 80  VLNLYKTLLYLGRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKH 223
           + N++K L+    +  + FD F +   +   KN+  T+  K  I+ +H
Sbjct: 390 IRNIHKLLITFSGEEQEDFDFFYENFKETVLKNNNFTNHAKYLILKQH 437


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +2

Query: 74  KAVLNLYKTLLYLGRDWPQGFDLFRKRLHKVFSKNSEET----DPQKIQIMVKHGEFVVK 241
           + V  L KT +  G ++ +      K+ HK    +S       DPQK+ + +  G FV+K
Sbjct: 583 ECVSRLRKTAID-GENFVKDIQKTYKKSHKTLESDSSPVLKLEDPQKVVLTLGRGMFVLK 641

Query: 242 EI 247
           E+
Sbjct: 642 EM 643


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 80  VLNLYKTLLYLGRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKH 223
           + N++K L+    +  + FD F +   +   KN+  T+  K  I+ +H
Sbjct: 390 IRNIHKLLITFSGEEQEDFDFFYENFKETVLKNNNFTNHAKYLILKQH 437


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -3

Query: 319 DYVFSYRHNIVSSLLCTSSTYMCFNFFNNKLTM---FYHYLYFLWISFFTIL 173
           DY + +R  + S          C +FFN KLT+       LYF + S F  +
Sbjct: 577 DYHWWWRSFMTSGFTAIYLFIYCIHFFNTKLTISGTISTILYFSYTSIFVFM 628


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,962,308
Number of Sequences: 27780
Number of extensions: 175001
Number of successful extensions: 507
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)