Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0129.Seq
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   4.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   5.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -3

Query: 208 LYFLWISFFTILAKYFMKPFSKQVETLRPISTQIEERFIKIQNRFSMWL 62
           ++FL++  +T  A   +       E L P+ST +   F K  +    W+
Sbjct: 287 IFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAVFAKTVSCIDPWI 335


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 139 VETLRPISTQIEERFIKIQNRFSMWLGHD 53
           +E L  ++  +EE+  ++ NR S+   HD
Sbjct: 95  IEQLTKLNNAVEEKRPELTNRKSVVFHHD 123


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -3

Query: 208 LYFLWISFFTILAKYFMKPFSKQVETLRPISTQIEERFIKIQNRFSMWL 62
           ++FL++  +T  A   +       E L P+ST +   F K  +    W+
Sbjct: 287 IFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAVFAKTVSCIDPWI 335


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 139 VETLRPISTQIEERFIKIQNRFSMWLGHD 53
           +E L  ++  IEE+  ++ NR  +   HD
Sbjct: 96  IEHLTKLNNAIEEKRFELTNRKGVVFHHD 124


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 52  VYFALLKCYSKIRVHSP 2
           +Y  +L C+ K R H P
Sbjct: 867 IYQLMLDCWQKERTHRP 883


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 19  SLNNILKEQNIHHGPAT 69
           S N+ + +  I+HGP T
Sbjct: 888 SFNHFVLKMGINHGPVT 904


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,129
Number of Sequences: 438
Number of extensions: 2320
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)