Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0129.Seq
         (522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22070.1 68418.m02570 expressed protein contains Pfam profile...    30   0.82 
At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)...    29   1.4  
At1g21960.1 68414.m02748 zinc finger (C3HC4-type RING finger) fa...    29   2.5  
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243...    28   3.3  
At5g32169.1 68418.m03692 hypothetical protein                          27   7.7  

>At5g22070.1 68418.m02570 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 362

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -3

Query: 241 FNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPISTQIEERFIKIQNRFSMWL 62
           F+N+  +F+  L  L   FF +    F  P     E+L PIS +I++R + I    S  L
Sbjct: 2   FSNQFVLFFSLLLCLPFVFFFVAPHVFPSPPG---ESLIPISDEIDDRSLFIAAAGSTSL 58

Query: 61  GH 56
            H
Sbjct: 59  SH 60


>At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)
            identical to telomerase reverse transcriptase
            [Arabidopsis thaliana] GI:5880683
          Length = 1123

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -3

Query: 301  RHNIVSSLLCTSSTYMCFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRP 122
            R NI    L  +  + C+ +  ++    +    F    F TI  +Y  +  +++V   R 
Sbjct: 992  RLNIYQIFLLAAMKFHCYVYEVSRFWKLHPQTLF---KFITISVRYMFRLINRRV---RR 1045

Query: 121  ISTQIEER-FIKIQNRFSMWLGHDVYFALLK 32
            I+T    R  +K+     +WLG D Y  +LK
Sbjct: 1046 INTGSSFRPVLKLYKEEVIWLGLDAYIQVLK 1076


>At1g21960.1 68414.m02748 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 204

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 276 SVLLQLICASISLTTNSPCFTIICIFC 196
           S L + IC SIS+  +S C T++ ++C
Sbjct: 82  SQLTERICKSISMVDSSVCATLVYMYC 108


>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
            At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
            At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
            At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
            At4g05280, At1g25886, At4g03300
          Length = 1113

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 310  FSY-RHNIVSSLLCTSSTYMCFNFFNNKLTMFYHYLYFLWIS 188
            FSY +   VS+  CT   YM    FNN     Y +L   WIS
Sbjct: 1069 FSYPKCGDVSTPECTEMCYMRSRLFNNLCNQCYIWLCAKWIS 1110


>At5g32169.1 68418.m03692 hypothetical protein
          Length = 258

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = -3

Query: 328 SVSDYVFSYRHNIVSSLLCTSSTYMCFNFFNNKLTMFYHYLYFLWISFFTIL 173
           ++S   FS+    VS L+    T +C   F  +++++   + FL++  FT++
Sbjct: 181 AISSMYFSFSQEEVSYLVLFPQT-LCSRLFVIRISLYLFSIQFLYLISFTVV 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,173,231
Number of Sequences: 28952
Number of extensions: 152939
Number of successful extensions: 416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)