Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0127.Seq
         (933 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    29   3.3  
At1g43690.1 68414.m05019 ubiquitin interaction motif-containing ...    29   4.4  

>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 524 TWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRGAVK 628
           T TPTS   G+K +++A  ++V   P  V W RG ++
Sbjct: 777 TATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVME 813


>At1g43690.1 68414.m05019 ubiquitin interaction motif-containing
           protein contains Pfam profile PF02809: Ubiquitin
           interaction motif
          Length = 599

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +2

Query: 434 EIGKIPYKSKE*TEIGLSVVPVWNKVHY*RTWTPTSKGEKPSIRAMAHYVNHHP 595
           E G +P +    T++ +SV P W    Y     P S  EK S       V H P
Sbjct: 522 EGGMVPMQRPRLTKLNVSVPPKWTPEEYMTCALPPSSSEKDSEVNQPKPVQHAP 575


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,603,963
Number of Sequences: 28952
Number of extensions: 370912
Number of successful extensions: 664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)