Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0126.Seq
         (334 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   2.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   2.6  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   4.5  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   4.5  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   4.5  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    20   5.9  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 239 PSSNRNMSSSDPPTLLQW 292
           P+S +++ +SDP  + +W
Sbjct: 102 PASQQSLDASDPDAMGKW 119


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 239 PSSNRNMSSSDPPTLLQW 292
           P+S +++ +SDP  + +W
Sbjct: 258 PASQQSLDASDPDAMGKW 275


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 303 CPPSHCSNVGGSLDDILRLE 244
           C P+ C N G  +D I   E
Sbjct: 110 CSPNPCRNNGSCVDRIADFE 129


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 219 RRRLDTALVLTVICHLAIRRRYYNG 293
           R R +   +L V+  +A+RR+  NG
Sbjct: 312 RVRSEVVKILNVLKKIALRRQTTNG 336


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 219 RRRLDTALVLTVICHLAIRRRYYNG 293
           R R +   +L V+  +A+RR+  NG
Sbjct: 238 RVRSEVVKILNVLKKIALRRQTTNG 262


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = +2

Query: 242 SSNRNMSSSDPPTLLQWL 295
           +++++  SS+PP +  W+
Sbjct: 187 NNSKSSQSSNPPQIYPWM 204


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,830
Number of Sequences: 336
Number of extensions: 1373
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6473381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)