Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0126.Seq
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    31   0.061
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    26   1.7  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   4.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   4.0  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    24   5.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    23   9.2  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    23   9.2  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    23   9.2  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 30.7 bits (66), Expect = 0.061
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 55  YFVGFQN-SEVMINRDNWGHSYCDVRGEILGSSQEXHQRKHL 177
           Y VG+ N + ++++   WGHS+ +V  E+L    + H  + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDI 183


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 168 KAFAKGVFINQERKLEVRRRLDTALVLTVIC-HL 266
           +A A GVF N   K+ V  +LDT  V   +C HL
Sbjct: 88  EALAFGVFPNFPSKMGVTVQLDTTYVAPALCSHL 121


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 39  NMISVLFCWFSELRGND 89
           N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 315 FPGSCPPSHCSNVGGSLDDILRLELGRYLIAFEPLTFV 202
           F  S  PS+     G +D + R  + RY   FE L F+
Sbjct: 525 FSKSARPSYGGQQDGIIDLLYRKSVSRYETDFEELEFL 562


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +1

Query: 46  SRFYFVGFQNSEVMINRDNWGHSYCDVRGEILGS 147
           S+  F+G  ++   I++D +      +RG ++ S
Sbjct: 865 SKLSFIGSNHTRYRIDKDEFSSGIASIRGTLMSS 898


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 275 PTLLQWLGGQLPGNQRF 325
           P +LQW GG+  G+  F
Sbjct: 717 PIVLQWTGGRAGGHHSF 733


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 67  FQNSEVMINRDNWGHSYCDVRGEI 138
           F  +E +++   +  SYC VRG I
Sbjct: 267 FVETETILDSSKYCVSYCQVRGSI 290


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 100 NWGHSYCDVRGEILGSSQEXHQRKHLPKVFSSIKNE 207
           NW   +  ++G I  SSQ      +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,305,735
Number of Sequences: 5004
Number of extensions: 21545
Number of successful extensions: 65
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)