Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0126.Seq
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical pr...    29   0.61 
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    27   3.3  
U21324-4|AAN63435.1|  537|Caenorhabditis elegans Hypothetical pr...    25   10.0 
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    25   10.0 
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    25   10.0 

>Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical
           protein K08F4.4 protein.
          Length = 532

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 137 FLDRRKRXISESICQRCFHQSRTKVRGSKAIRYRPSSNRNMSS 265
           FLD+ +    E+I Q  F Q +T+    K  R R +++ NM+S
Sbjct: 130 FLDQIRNMFPENIIQATFQQVQTEYMPIKPSRVRNATSMNMTS 172


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 140 LDRRKRXISESICQRCFHQSRTKVRGS 220
           L+     +S  ICQ CFHQ   K++G+
Sbjct: 331 LEPTHEELSYMICQLCFHQVGKKLQGN 357


>U21324-4|AAN63435.1|  537|Caenorhabditis elegans Hypothetical
           protein C35D10.7a protein.
          Length = 537

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 300 PPSHCSNVGGSLDDILRLELGRYLIAFEPL 211
           P  HC    GS+ D LRL  G + I  EP+
Sbjct: 24  PSLHCKKPEGSIRDTLRLS-GSFKIYKEPM 52


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
           ATPase protein.
          Length = 2395

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 189 FINQERKLEVRRRLDTALVLTVICHLAIRRRYYNGSAGSFRETKD 323
           FI +  K EV ++L       V C L+ R+RY      S R TK+
Sbjct: 776 FILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLYDDFMSRRSTKE 820


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
           protein Y111B2A.22 protein.
          Length = 2395

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 189 FINQERKLEVRRRLDTALVLTVICHLAIRRRYYNGSAGSFRETKD 323
           FI +  K EV ++L       V C L+ R+RY      S R TK+
Sbjct: 776 FILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLYDDFMSRRSTKE 820


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,232,724
Number of Sequences: 27780
Number of extensions: 121856
Number of successful extensions: 314
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)