Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0126.Seq
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.3  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    20   6.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   6.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = -2

Query: 123 VAIRMPPVIPINH-----YLGVLKTN 61
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = -2

Query: 123 VAIRMPPVIPINH-----YLGVLKTN 61
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = -2

Query: 123 VAIRMPPVIPINH-----YLGVLKTN 61
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 206 KVRGSKAIRYRPSSNRNMSSSDP 274
           K RGS A   +PS +    SS+P
Sbjct: 7   KPRGSSAEEQQPSGDILSPSSEP 29


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 206 KVRGSKAIRYRPSSNRNMSSSDP 274
           K RGS A   +PS +    SS+P
Sbjct: 7   KPRGSSAEEQQPSGDILSPSSEP 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,639
Number of Sequences: 438
Number of extensions: 1741
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)