Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0126.Seq
         (334 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66290.1 68414.m07528 F-box family protein contains F-box dom...    28   1.8  
At5g58950.1 68418.m07384 protein kinase family protein concontai...    27   2.4  
At4g10890.1 68417.m01772 expressed protein                             27   3.1  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    26   5.5  
At1g29140.1 68414.m03566 pollen Ole e 1 allergen and extensin fa...    26   7.2  
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ...    26   7.2  
At4g24660.1 68417.m03530 zinc finger homeobox family protein / Z...    25   9.5  
At4g02810.1 68417.m00381 expressed protein                             25   9.5  

>At1g66290.1 68414.m07528 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 453

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 219 RRRLDTALVLTVICHLAIRRRYYNGSAGSFRE 314
           RR LD   VL VI    +   YY  S+ SFR+
Sbjct: 207 RRYLDNVRVLRVISQSLLSFNYYGSSSKSFRD 238


>At5g58950.1 68418.m07384 protein kinase family protein concontains
           protein kinase domain, Pfam:PF00069
          Length = 525

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 155 RXISESICQRCFHQSRTKVRGSKAIRYRPSSNRNMSSSDP 274
           R  S  +    F  ++ K  G KAI  R SS+ + SSSDP
Sbjct: 21  RLNSSKLASLPFMINQDKFSGLKAIPQRSSSSSSASSSDP 60


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 149 RKRXISESICQRCFHQS-RTKVRGSKAIRYRPSSNRN 256
           ++  I   +C RC+H S R K+R S   R   S++ N
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSEN 230


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 334 RSPKSLVSRKLPAEPL**RRRIAR*HITVRTRAVSNR 224
           RSP  L  R +   P+  RRRI+R  +  R R+V  R
Sbjct: 621 RSPIRLSRRSISRSPVRGRRRISRSPVPARRRSVRPR 657


>At1g29140.1 68414.m03566 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 171

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 277 RRIAR*HITVRTRAVSNRLRTSNFRS*LMKTPLA 176
           R  AR  +T     VSN  RT N    + KTPLA
Sbjct: 121 RNAARISLTANDGIVSNETRTINPLGFMRKTPLA 154


>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
           almost identical to ubiquitin-specific protease 15
           GI:11993475 [Arabidopsis thaliana], 7 amino acid
           difference
          Length = 924

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 173 ICQRCFHQSRTKVRGSKAIRY 235
           +C RCF  ++T+    K++RY
Sbjct: 129 VCARCFGPAKTRCSRCKSVRY 149


>At4g24660.1 68417.m03530 zinc finger homeobox family protein /
           ZF-HD homeobox family protein hypothetical protein
           T8K22.16, Arabidopsis thalianachromosome II BAC T8K22,
           PATX:G3184285
          Length = 220

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 176 CQRCFHQSRTKVRGSKAIRYRPSSNRNMSSSDPPTLL 286
           C R FH+  T+  G +A R     NR      PP  L
Sbjct: 90  CHRNFHRKETESIGGRAHRVPTYYNRPPQPHQPPGYL 126


>At4g02810.1 68417.m00381 expressed protein 
          Length = 271

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 215 GSKAIRYRPSSNRNMSSSDPPTLLQW 292
           G+K +  RP    N +  +P T+L W
Sbjct: 237 GNKKVSNRPKRRCNENGCEPKTMLNW 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,826,963
Number of Sequences: 28952
Number of extensions: 115477
Number of successful extensions: 339
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)