Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0116.Seq
         (960 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    28   0.12 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   6.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   8.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 661 VRYNICTYRYYFKFLILMHAY 723
           V + +CTY +Y+ F+IL+  Y
Sbjct: 94  VHFLLCTYYFYYAFIILLCVY 114


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 448 CLVSPVDNIWLCKHYFRAFTAIC 380
           C V+P +N   C     AF  IC
Sbjct: 72  CKVNPCENGGTCVDKINAFQCIC 94


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 326 VSDAVKRESLNDCRND-GTTDCSE 394
           VS  VKRE +++ +ND G T  S+
Sbjct: 39  VSQIVKREPMDEDKNDSGVTSGSD 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,580
Number of Sequences: 336
Number of extensions: 4018
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27099446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)