Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0116.Seq
         (960 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   7.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 813 CRSLRKXLXRPKSGW 857
           CR + +   RP+SGW
Sbjct: 642 CRDIPEEFLRPESGW 656


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 281 VEINVRRILSTRIRKVSDAVKRESLN 358
           +++++ R+L  +    SD +KR+ +N
Sbjct: 128 IKVDIHRVLPGKPTTTSDELKRDIIN 153


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 281 VEINVRRILSTRIRKVSDAVKRESLN 358
           +++++ R+L  +    SD +KR+ +N
Sbjct: 128 IKVDIHRVLPGKPTTTSDELKRDIIN 153


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 281 VEINVRRILSTRIRKVSDAVKRESLN 358
           +++++ R+L  +    SD +KR+ +N
Sbjct: 128 IKVDIHRVLPGKPTTTSDELKRDIIN 153


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 281 VEINVRRILSTRIRKVSDAVKRESLN 358
           +++++ R+L  +    SD +KR+ +N
Sbjct: 128 IKVDIHRVLPGKPTTTSDELKRDIIN 153



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 338 VKRESLNDCRNDGTTDCS 391
           ++ E  N  RNDG   CS
Sbjct: 237 LRHEDRNSYRNDGERSCS 254


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 281 VEINVRRILSTRIRKVSDAVKRESLN 358
           +++++ R+L  +    SD +KR+ +N
Sbjct: 128 IKVDIHRVLPGKPTTTSDELKRDIIN 153


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 281 VEINVRRILSTRIRKVSDAVKRESLN 358
           +++++ R+L  +    SD +KR+ +N
Sbjct: 128 IKVDIHRVLPGKPTTTSDELKRDIIN 153


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 281 VEINVRRILSTRIRKVSDAVKRESLN 358
           +++++ R+L  +    SD +KR+ +N
Sbjct: 128 IKVDIHRVLPGKPTTTSDELKRDIIN 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,207
Number of Sequences: 438
Number of extensions: 4492
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)