Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0111.Seq
(772 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VVS4 Cluster: Mediator of RNA polymerase II transcrip... 78 3e-13
UniRef50_Q17NH9 Cluster: Mediator of RNA polymerase II transcrip... 74 3e-12
UniRef50_UPI0000E4A3BB Cluster: PREDICTED: similar to conserved ... 56 7e-07
UniRef50_A7RKV3 Cluster: Predicted protein; n=1; Nematostella ve... 50 5e-05
UniRef50_Q9P086 Cluster: Mediator of RNA polymerase II transcrip... 46 0.001
UniRef50_UPI0001555AE6 Cluster: PREDICTED: hypothetical protein,... 44 0.004
UniRef50_Q1EPC0 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_UPI000155649E Cluster: PREDICTED: similar to beta arres... 34 4.5
>UniRef50_Q9VVS4 Cluster: Mediator of RNA polymerase II
transcription subunit 11; n=4; Endopterygota|Rep:
Mediator of RNA polymerase II transcription subunit 11 -
Drosophila melanogaster (Fruit fly)
Length = 176
Score = 77.8 bits (183), Expect = 3e-13
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = +2
Query: 251 LAQVSTGQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDRLKASH 385
L QVSTGQPHEGSGYAS KVLQMAWHR++H RS V EL+ KA H
Sbjct: 66 LTQVSTGQPHEGSGYASAKVLQMAWHRIQHARSRVRELEETKAKH 110
Score = 75.4 bits (177), Expect = 1e-12
Identities = 37/64 (57%), Positives = 45/64 (70%)
Frame = +3
Query: 63 PMERIQVLDEIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLSQVESKLSEQ 242
P+++I LDEIEK+II EL KEKS QK AE+ + QFL++LS VESKLSEQ
Sbjct: 3 PLDKIHALDEIEKEIILCMQSAGQALQELGKEKSSQKNAETQSQQFLKSLSSVESKLSEQ 62
Query: 243 INYL 254
INYL
Sbjct: 63 INYL 66
>UniRef50_Q17NH9 Cluster: Mediator of RNA polymerase II
transcription subunit 11; n=3; Endopterygota|Rep:
Mediator of RNA polymerase II transcription subunit 11 -
Aedes aegypti (Yellowfever mosquito)
Length = 132
Score = 74.1 bits (174), Expect = 3e-12
Identities = 34/54 (62%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Frame = +2
Query: 251 LAQVSTGQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDRLKASHL-ATPRTAT 409
L QVSTGQPHEGSGYA+ KVLQMAWHR++HV+S + EL+ K ++ AT R T
Sbjct: 66 LTQVSTGQPHEGSGYAAAKVLQMAWHRIQHVKSRIKELEECKIKYVQATNRLQT 119
Score = 70.5 bits (165), Expect = 4e-11
Identities = 34/63 (53%), Positives = 47/63 (74%)
Frame = +3
Query: 66 MERIQVLDEIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLSQVESKLSEQI 245
+++IQVLD IEK+++ ELSKEK+ QK E++T+QFL++L+ VESKLSEQI
Sbjct: 4 IDKIQVLDSIEKELLLCLQSAGQALLELSKEKTSQKATETHTNQFLKSLNIVESKLSEQI 63
Query: 246 NYL 254
NYL
Sbjct: 64 NYL 66
>UniRef50_UPI0000E4A3BB Cluster: PREDICTED: similar to conserved
hypothetical protein; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to conserved
hypothetical protein - Strongylocentrotus purpuratus
Length = 88
Score = 56.4 bits (130), Expect = 7e-07
Identities = 24/40 (60%), Positives = 32/40 (80%)
Frame = +2
Query: 251 LAQVSTGQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDR 370
L+QVSTGQPHEGS Y++QK QMA HRLEH ++ + E+ +
Sbjct: 44 LSQVSTGQPHEGSSYSAQKEAQMAIHRLEHAKTKLTEIKK 83
Score = 46.4 bits (105), Expect = 8e-04
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +3
Query: 144 ELSKEKSGQKQAESNTSQFLRTLSQVESKLSEQINYL 254
ELSK++ +KQ +SNT F +TL VE +L EQINYL
Sbjct: 8 ELSKDRPVEKQIDSNTKTFAKTLEAVEKRLMEQINYL 44
>UniRef50_A7RKV3 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 116
Score = 50.4 bits (115), Expect = 5e-05
Identities = 25/67 (37%), Positives = 37/67 (55%)
Frame = +3
Query: 54 MAAPMERIQVLDEIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLSQVESKL 233
MA +R++ L+EIEKDI+ ELS E + ++F+++L VE L
Sbjct: 1 MAHSRDRLKQLEEIEKDIVKVMQSAGETIAELSNENPSEDMVNMKATEFVKSLEGVEKGL 60
Query: 234 SEQINYL 254
+EQINYL
Sbjct: 61 TEQINYL 67
Score = 38.3 bits (85), Expect = 0.21
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 251 LAQVSTGQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDRL 373
L QV+TGQPHEGS Y K ++A R V+ + E+ ++
Sbjct: 67 LTQVATGQPHEGSTYGVDKDFELATSRTAIVKGQLQEVQKI 107
>UniRef50_Q9P086 Cluster: Mediator of RNA polymerase II
transcription subunit 11; n=15; Euteleostomi|Rep:
Mediator of RNA polymerase II transcription subunit 11 -
Homo sapiens (Human)
Length = 117
Score = 46.0 bits (104), Expect = 0.001
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +2
Query: 245 KLLAQVSTGQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDR 370
+ L QV+TGQPHEGS Y+S+K QMA R+++ R ++++ R
Sbjct: 68 RYLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSDVAR 109
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 69 ERIQVLDEIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLSQVESKLSEQIN 248
ER++ L++IE++I ELSKEK+ ++ + + F ++ VE++LS QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68
Query: 249 YL 254
YL
Sbjct: 69 YL 70
>UniRef50_UPI0001555AE6 Cluster: PREDICTED: hypothetical protein,
partial; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein, partial - Ornithorhynchus anatinus
Length = 150
Score = 44.0 bits (99), Expect = 0.004
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +2
Query: 260 VSTGQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDRLKASHLAT-PRTATG 412
V+TGQPHEGS Y+++K QMA R+++ R V EL L T PR ++G
Sbjct: 1 VATGQPHEGSSYSARKDCQMALKRVDYARLKVGELACTCEQMLDTSPRLSSG 52
>UniRef50_Q1EPC0 Cluster: Putative uncharacterized protein; n=1;
Musa acuminata|Rep: Putative uncharacterized protein -
Musa acuminata (Banana)
Length = 357
Score = 34.3 bits (75), Expect = 3.4
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3
Query: 144 ELSKEKSGQKQAESNTSQFLRTLSQVESKLSEQINY 251
ELS+ KS Q+Q ++ ++ L+TL Q+ K+ INY
Sbjct: 187 ELSQIKSQQQQIQNQQAEILKTLQQMNEKMDIMINY 222
>UniRef50_UPI000155649E Cluster: PREDICTED: similar to beta arrestin
2 splice; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
similar to beta arrestin 2 splice - Ornithorhynchus
anatinus
Length = 305
Score = 33.9 bits (74), Expect = 4.5
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 144 ELSKEKSGQKQAESNTSQFLRTLSQVESKLSEQINYL 254
ELSKEK+ ++ + + F ++ +VE++LS QI YL
Sbjct: 240 ELSKEKANERFLDRQAAAFTSSVQRVEAELSGQIRYL 276
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,636,049
Number of Sequences: 1657284
Number of extensions: 13650639
Number of successful extensions: 29913
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29879
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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